Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20citrinum_20[genbank_20GCA_5F000286055.1_202012-11- 01] 1,772 sequences; 26,251,846 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq1199 104 2e-17 seq641 104 2e-17 seq90 95.1 1e-14 seq102 91.5 1e-13 >seq1199 Length=11192 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || || |||||||| || ||||| || | | || | ||||| Sbjct 969 ACCAAGTGAAGAGTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGTACGACCATCTTCT 1028 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 | |||||||| ||| |||||||||| ||||| || || || | ||| |||||||| Sbjct 1029 AATTGTTTACCAGCGAAAATGAGACGTTGTTGGTCTGGTGGAATACCTTCTTTATCTTGA 1088 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 || ||| ||| | |||| | | |||| |||| ||||||| || || | ||| Sbjct 1089 ATTTTGGCTTTAACATTTTCAATGTTATCTGAACCTTCGACTTCTAATGTGATGGTTTTA 1148 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || |||||||| ||||||||||||||| Sbjct 1149 CCAGTGAGAGTTTTAACAAAGATTTGCATA 1178 Score = 100 bits (110), Expect = 2e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 27017 ATTGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC 27076 ||| ||||| | || | || || ||||| | || || |||||||| |||||||| || Sbjct 719 ATTTCCTCCTCTTAATCTTAAAACTAAATGGAGTGTGGATTCTTTTTGGATATTGTAATC 778 Query 27077 -GCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCG 27135 | | | || || | ||||| | |||||||| || |||| | | |||||||| | Sbjct 779 TGATAAAGTA-CGACCATCTTCTAATTGTTTACCTGCAAAAATTAATCTTTGTTGATCTG 837 Query 27136 GCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTT 27195 | || | ||| |||||||| ||| ||| ||| | |||| | | |||| ||| Sbjct 838 GTGGGATACCTTCTTTATCTTGGATTTTGGCTTTGACATTTTCAATGTTATCTGAACCTT 897 Query 27196 CAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | ||||||| || || | ||| || || |||||||| |||||||||||||| Sbjct 898 CGACTTCTAATGTGATGGTTTTACCAGTGAGAGTTTTTACAAAGATTTGCAT 949 >seq641 Length=13309 Score = 104 bits (114), Expect = 2e-17 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 27059 TTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAAT 27118 ||||||||| ||||| || | | || | ||||| | |||||||| ||| |||| Sbjct 12554 TTTTTGAATGTTGTAATCAGAAAGAGTACGACCATCTTCCAATTGTTTACCTGCGAAAAT 12613 Query 27119 GAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTC 27178 |||||| |||||||| || || | ||| |||||||| ||||||| ||| | | || Sbjct 12614 GAGACGTTGTTGATCTGGTGGAATACCTTCTTTATCTTGGATCTTGGCTTTAACATTCTC 12673 Query 27179 TACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAA 27238 | | || | |||||||||| || || || | ||| || || || ||||| ||||| Sbjct 12674 AATGTTATCACTACCTTCAACTTCGAGTGTAATGGTTTTACCAGTGAGGGTTTTAACAAA 12733 Query 27239 GATTTGCATA 27248 |||||||||| Sbjct 12734 GATTTGCATA 12743 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || || || |||||||| ||||| || | | || | ||||| Sbjct 12762 ACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAATCAGAAAGAGTACGACCATCTTCC 12821 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 | |||||||| ||| |||| | | |||||||| || || | ||| |||||||| Sbjct 12822 AATTGTTTACCTGCGAAAATCAATCTTTGTTGATCTGGTGGAATACCTTCTTTATCTTGA 12881 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| |||| | |||| | | | |||| | ||||||||| ||||| |||| || Sbjct 12882 ATCTTTGTTTTAACATTTTCAATATTATCTGAGCTTTCAACTTCAAGAGTGATAGTCTTA 12941 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || | ||||| ||||||||||||||| Sbjct 12942 CCAGTTAATGTTTTAACAAAGATTTGCATA 12971 >seq90 Length=44396 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| | ||||||||||| | || ||||| |||||||| || || | ||| ||||| Sbjct 14360 TCTTCTAATTGTTTACCGGCAAAGATAAGACGTTGTTGATCTGGTGGGATACCTTCTTTG 14301 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || |||||| ||| | | |||| | |||||| |||||||||| ||||| || Sbjct 14300 TCTTGAATCTTGGCTTTGACGTTTTCGATGTTGTCTGAACCTTCAACTTCGAGAGTGATG 14241 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | ||| || || | ||||| || ||||||||||| Sbjct 14240 GTTTTACCAGTTAAGGTTTTAACGAAGATTTGCAT 14206 >seq102 Length=41085 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || || |||||||| || ||||| || | | || | ||||| Sbjct 825 ACCAAGTGAAGAGTGGATTCTTTTTGGATGTTGTAATCAGAGAGAGTACGACCATCTTCT 766 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 | |||||||| ||| |||||||||| |||||||| || || | ||| ||||| || Sbjct 765 AATTGTTTACCAGCGAAAATGAGACGTTGTTGATCTGGTGGAATACCTTCTTTGTCTTGA 706 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| ||| | |||| | | || | |||| || |||| || || | || Sbjct 705 ATCTTGGCTTTAACATTTTCAATGTTATCACTACCTTCGACCTCTAAGGTGATGGTCTTT 646 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || ||||| ||||||||||||||| Sbjct 645 CCAGTGAGGGTTTTAACAAAGATTTGCATA 616 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || |||||||| |||||||| || | | || | ||||| | |||||||| Sbjct 357 GTGGATTCTTTTTGGATATTGTAATCAGAAAGAGTACGACCATCTTCTAATTGTTTACCA 298 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| |||| | | |||||||| || || | ||| ||||| || |||||| ||| Sbjct 297 GCGAAAATTAATCTTTGTTGATCTGGTGGAATACCTTCTTTGTCTTGAATCTTGGCTTTA 238 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | |||| | | || | |||| || |||| || |||| ||||| || |||||| Sbjct 237 ACATTTTCAATGTTATCACTACCTTCGACCTCTAAGGTGATAGTCTTGCCAGTGAGAGTT 178 Query 27231 TTCACAAAGATTTGCATA 27248 || ||||||||||||||| Sbjct 177 TTAACAAAGATTTGCATA 160 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || || |||||||| || ||||| || | | || | ||||| Sbjct 597 ACCAAGTGAAGAGTGGATTCTTTTTGGATGTTGTAATCAGAGAGAGTACGGCCATCTTCT 538 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 | |||||||| ||| |||| | | |||||||| || || | ||| ||||| || Sbjct 537 AATTGTTTACCAGCGAAAATTAATCTTTGTTGATCTGGTGGAATACCTTCTTTGTCTTGA 478 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| || | |||| | | | || | |||||||||| | || || | ||| Sbjct 477 ATCTTGGCCTTGACATTTTCAATATTATCAGAACCTTCAACTTCCAAGGTGATGGTTTTA 418 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || |||||||| ||||||||||||||| Sbjct 417 CCAGTGAGAGTTTTAACAAAGATTTGCATA 388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424925223010464