Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20citrinum_20[genbank_20GCA_5F000286055.1_202012-11- 01] 1,772 sequences; 26,251,846 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq319 241 2e-58 seq274 113 6e-20 seq642 100 4e-16 seq174 98.7 1e-15 seq1107 84.2 3e-11 >seq319 Length=25483 Score = 241 bits (266), Expect = 2e-58 Identities = 1178/1841 (64%), Gaps = 60/1841 (3%) Strand=Plus/Minus Query 110363 CGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGCATAGAAGAG 110422 |||||||||||||| || ||||| | |||| |||||| ||| | ||||||||| | | Sbjct 8400 CGGAGATAGTACATACCAGTCTTTAAACCTTTCCTCCATGAGTAGAAATGCATAGAGGTG 8341 Query 110423 AGCTTGGACATCGTTGGACTTTCCATGAAGAGGTTCATACTTTGACTTTGGTCAATGAAG 110482 || |||| | ||||| | | ||||| | || | |||||| ||||| || ||||| Sbjct 8340 AGTTTGGCAAAGGTTGGTTCTGCAATGAAAACATTGAAACTTTGGCTTTGATCGATGAAA 8281 Query 110483 CGCCCCCGTTGTGCCGCCATATCAATGACA-TCCTTCATCTTAATTTCCCAAACTGTGCG 110541 || || | || ||||||||||||| | | ||| | |||||||||||| || Sbjct 8280 GCACCACGATCAGCGGCCATATCAATGAGAGTTCTTTGACG-AATTTCCCAAACAGTTTT 8222 Query 110542 ATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCTT 110601 |||||| | || | ||||| ||||| | || || |||||||| | || | Sbjct 8221 ATAGAGTTCTTTCAATTCATCAGGGATGCCACCAATGGATTGAATGGAACCACGTGC-TG 8163 Query 110602 CACCATGA---GATCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGAC 110658 || |||| | | |||||| || | ||| | ||| | || | |||| || | | Sbjct 8162 CA--ATGATTTGGTTCTTCATCTCTGGTGTCCAAATACCCAACTCCATGAGATCCTCTAG 8105 Query 110659 GAGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGT 110718 | || || |||||||| || ||||| || | | | ||| || |||| Sbjct 8104 TAATTGTTTATTGACAATTGTGAATTCACCAGCTAAAACACGACGACTGTAAATATTTGA 8045 Query 110719 TGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCAT 110778 |||||||||||||| |||||||| ||||| | |||||| || || || |||||||| Sbjct 8044 AGTGTATGGTTCAAAACATTCATTGTTACCAAGGATTTGACTTGTTGAAGCGGTTGGCAT 7985 Query 110779 TGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATG--CGT-TCCTTGAGAAC 110835 |||||| || || || |||||| | ||| | |||| | | | ||||| | | Sbjct 7984 TGGTGCAATTAAGAGTGAGTTACGTAAACCACCTTTATTGACGATCTTATCCTTTAATTC 7925 Query 110836 A-TCCCAGTCGTAGTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTT 110894 ||| | || | ||| |||||| | || |||| |||| ||| | ||||| | |||| Sbjct 7924 TGTCCAATTCCAACGTGAACTTGGTGTAACATTCC-ACATATCATATTGAAGGATACCTT 7866 Query 110895 GGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGC 110954 || || || || || | || | |||||| | ||| | | ||||||||| Sbjct 7865 TAGAAGCTGGTGAGCCTTGGAAAGATTCATAAGGACCATCACGAACGGCCAATTCATGAG 7806 Query 110955 TCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTT 111014 || | | ||| ||| ||||||||| ||| | |||| | | || Sbjct 7805 AGGCTGTTAAAGCAGCGAAATAAATGGTTTCAGCGATTTCAACATTTAATTTGGCAGCGG 7746 Query 111015 CATCTGAATC-AAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCC 111073 || | ||| ||| || || || ||| || ||||| || | |||||||| ||| Sbjct 7745 CAACACTATCGAAAGGCATA-CGCATTTTAATGAAAACATCTGCTAAACCTTGAATACCA 7687 Query 111074 AAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTC---AACGGGATAAAAA 111130 | |||||| || | |||| | ||| || || || ||| ||| |||||| | Sbjct 7686 ATACCAATTGGACGATGTCTAAGATTTGAGGTTTTAGC---CTCGATAACTGGATAATAG 7630 Query 111131 TTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCAT----GAAG 111186 || | ||||||| || |||||| || | | || ||||||||| ||| Sbjct 7629 TTACGATCAATGATAACATTAAGATTTACTGTGATTAATTTGGTGATTTCAAAGAGGAAT 7570 Query 111187 TTTT--TCATAATCAAA---------AGTGC--GAGTCTCTTCATTGAC--AT--ACTTT 111229 | | ||| | ||||| | || || || | ||||| || | ||| Sbjct 7569 TGATGGTCAAATTCAAACTCTTTTGGATTGGTTGAACCTGCTTTTTGACGAATGAATTTT 7510 Query 111230 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 111289 ||||| ||||| || || | ||| ||||| || | ||||| ||| || | | Sbjct 7509 GGAAGTGCGATAGAGGCGAGATTACAAACGGCAATTTCATCTGGTGATGTATATTGAATG 7450 Query 111290 ATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTG 111349 ||||||||||| | || ||| |||| || || ||||||||||| || || Sbjct 7449 ATTTCTGTACAAAGATTACTACTACTAATGGTACCTAAATTCTTTTGATTGGATTTGGCA 7390 Query 111350 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATA 111409 ||||| |||||||| || | ||| | || || || || || || |||| | ||| Sbjct 7389 TTGCAAGCATCCTTATACAAGATGAATGGTGTACCAGTTTCAACTTGAGATTCCATAATG 7330 Query 111410 GCCTTCCAAACATCGGCGGCTGGTACAATG-GCGTTGGCCCGTCCCTCC----GCCTCGT 111464 || ||||| ||| ||| | || | |||| | ||| || || | Sbjct 7329 GCGAACCAAAGATCTTGAGCTTTAATTATACGTCTTGGTAGG--CCTGGTGTGGCTTCAT 7272 Query 111465 ACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGT 111524 | || |||||| || | | ||| | || | ||||||||||| | || Sbjct 7271 ATTTCAAGTAGAGAGCACGATGTTGTTCAGAGTGAGTTTCAGCAAGACCTGGTGCTTCGT 7212 Query 111525 CTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAA 111584 |||||| || |||| ||| | |||| || || || |||| ||| || | || | Sbjct 7211 TTGGACAAAAGAGAGCCCAATCACCATTTTGTTCGACACGCTCCATAAAGATATCACTGA 7152 Query 111585 TCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTA 111644 ||| |||| | || || |||||| | ||| || | ||| ||| || | Sbjct 7151 CCCAAAGGGCATAGAAAAGGTCTCTAGCTCTCATCTCCTCTTTACCAGTGTTTT-TCTTG 7093 Query 111645 AC-TCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCC 111703 | |||| ||| || | || ||| |||||||||||||| | || || || | | || Sbjct 7092 AGATCAATGAATTCAAAGACATCGGCGTGCCATGGCTCCAAGTAAACGGCAAAGGCACCT 7033 Query 111704 TTTCGAC-GCC--CAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATT 111760 |||| ||| || |||||| || || || || || | || || || ||||||||| Sbjct 7032 TTTCTCTTGCCACCACCTTGATCGACGTAACGAGCAGTATCATTGAAAACACGAAGCATT 6973 Query 111761 GGAATAATACCATCTGATTG-ACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCAC 111819 || | | ||||| || | | |||||| || || |||||| | || | || | | Sbjct 6972 GGTACCAAACCAT-TGCTAGTACCATTGGTACCACGAATATAACTTTGAGCAGCACGAAT 6914 Query 111820 ATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAG 111879 | ||| | | || |||||||| ||||| | ||||||||| | || || | | | Sbjct 6913 TTTATGAACGGCAATACCAATACCACCAGCACTCTTTGAGATGAGTGCGCATTGTTTCAA 6854 Query 111880 AGTTCCATAGATACCGTTGATTGAGTCCTCCTTG-TTGGCGATAAGGAAGCAACTGGACA 111938 || | |||||||| | |||||| ||||| || || | |||| || ||| |||| Sbjct 6853 GGTATCGTAGATACCATCGATTGAATCCTCTTTCATTTGAACTAAGAAA-CAAGAAGACA 6795 Query 111939 TCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACA-TACCT 111997 | || ||| ||||||||| |||||||| | ||||||||| || ||| |||| | | || Sbjct 6794 TTTGTGGTGATGGTGTACCTGCATTGAATAAGGTTGGTGTGGCATGAGTGAATAATTTCT 6735 Query 111998 TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATT 112057 | | | | | |||||| | | |||||||||||||||| || ||||| || ||| Sbjct 6734 CTGATAAACGTTT-GTATGTGTTGATAGCAGAATCAATGTCTTCGCCATGGATACCAATT 6676 Query 112058 GCGACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGA 112117 | || ||||| ||||||| ||||| ||| | || ||||| | | || |||||| Sbjct 6675 GAAACACGCATCAACATGTGTTGTGGACGTTCGACGATTTTGCCACCAATACGATGAAGA 6616 Query 112118 TAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATC 112158 ||| || | ||||||| |||||| || || |||| Sbjct 6615 TAGGAACGTTCCAATGTTTTGAATCCAAAGAAATCATAATC 6575 >seq274 Length=24667 Score = 113 bits (124), Expect = 6e-20 Identities = 264/395 (67%), Gaps = 4/395 (1%) Strand=Plus/Plus Query 9161 CTATCAAGCCTCTTCCTCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAACGAGGA 9220 ||| ||||| || |||| || | | |||||||||| | ||| |||||| ||| Sbjct 260 CTACCAAGCTTCAACCTCTGAATTATATGGTAAGGTTCAAGAGATTCCACAATCAGAGAC 319 Query 9221 GACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTGGCTCGT 9280 ||||| ||||| ||||| || |||| || |||| || ||||| |||| Sbjct 320 CACACCATTCTATCCACGTTCACCATACGCTGTAGCAAAACAATATGCCTATTGGATCGT 379 Query 9281 CAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAACCATGA 9340 ||| || || ||| | |||| ||| || || || ||| | ||||||||||| Sbjct 380 TGTAAACTATCGTGAGGCATACGATATGTACGCATGTAATGGTATCTTATTCAACCATGA 439 Query 9341 ATCACCGAGACGAGGTGCAGACTTTGTGACCATGAAGATTAC-CGAGG-GTATCAAACAA 9398 |||||| | ||||| || |||||| || | ||||| || || || | | Sbjct 440 ATCACCACGTAGAGGTCCAACCTTTGTAACTAGAAAGATCACTCGTTTCGTTGCTGGTAT 499 Query 9399 ATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGAGAGAGATTGG 9458 |||| ||| || | || || | | |||||||| || ||||| | | |||||| Sbjct 500 TGCATGT--GGTAAAGATGAAATCCTCTACTTGGGTAATATTAACGCTAAACGTGATTGG 557 Query 9459 GGTCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGGAAGCCGAC 9518 |||||||| | ||||| || ||||| |||||| | ||| | ||||||||| || | || Sbjct 558 GGTCACGCCAGAGACTACGTCGAAGCAATGTGGTTAATGTTACAACAAGAGAAACCAGAA 617 Query 9519 GAATATGTAGTAGCAACGGGTGAGACCCATTCAGT 9553 || | || | || || ||||| || |||||||| Sbjct 618 GATTTCGTTATCGCCACTGGTGAAACTCATTCAGT 652 >seq642 Length=17076 Score = 100 bits (110), Expect = 4e-16 Identities = 217/325 (67%), Gaps = 10/325 (3%) Strand=Plus/Plus Query 11624 CCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCA 11683 || || ||||| || ||||||||||| |||||||||||| ||| | | || |||| Sbjct 11062 CCAACAGCATCGATTTCATCAATGAATACAATACATGGTGCATTCTTTCTAGCTTGTTCA 11121 Query 11684 AAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCA 11743 || | ||| | ||| | | | ||| ||||||||||||||||| || || | || Sbjct 11122 AATAAATCTCTAACACGTGATGGACCAACACCAACAAACATCTCTACGAAATCTG----- 11176 Query 11744 GAGCACTGGAT-----GAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGG 11798 | |||||| | |||||| ||||||| ||||| || ||||| || | | | Sbjct 11177 AACCACTGGTTGAATAGAATGGTACATTTGCCTCACCAGCTGTGGCTTTAGCAATCAATG 11236 Query 11799 TCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCACTTC 11858 | || || |||||||| || | | || || |||| || ||||| |||||| | Sbjct 11237 TTTTACCAGTACCTGGTGGTCCTACTAAAATTGCACCTCTTGGTATCTTTGCACCAATGT 11296 Query 11859 CAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCTCTTCAAGTTCATCTTTGGCCG 11918 || || ||| || | ||| | ||| | |||| ||||||| ||| |||| || Sbjct 11297 CATGGAATTTCTTTGGATTCTTTAAAAAGTTTACAAATTCTTCAATCTCAACTTTAGCTT 11356 Query 11919 CGTCAATCCCCTCAACATCACTGAA 11943 | ||| || | |||||||| || Sbjct 11357 CACCAAGACCTGCTACATCACTAAA 11381 >seq174 Length=33651 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/189 (73%), Gaps = 5/189 (3%) Strand=Plus/Plus Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGC 11599 || |||||||||||| | ||||||||| | ||| | |||||||||||||| ||| Sbjct 12633 AAACCATCCATCTCGACCAATAATTGATTCAATGTATTCTCTCTCTCATCATTA--TGGA 12690 Query 11600 ATACCACCAGCACTGCGTTGCT-TGCCCACCGCATCAATCTCATCAATGAAGACAATACA 11658 | ||||||| | ||||| | || || ||||| || ||||||||||| ||||| || Sbjct 12691 A-ACCACCACGTGATC-TTGCTCTACCAACAGCATCGATTTCATCAATGAATACAATGCA 12748 Query 11659 TGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAAC 11718 ||| |||| | || || || ||||||||| | ||| | | ||| |||||||| Sbjct 12749 AGGTGTATTTGCACGTGCTTCTTTAAAGAGATCTCTAACACGAGATGGACCAACACCAAC 12808 Query 11719 AAACATCTC 11727 |||||| || Sbjct 12809 AAACATTTC 12817 >seq1107 Length=8415 Score = 84.2 bits (92), Expect = 3e-11 Identities = 112/153 (73%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 27865 ACCAACAAATCCATATTCAGCATCAAAAGCGGCGGCCGAAATGATAGTCCGTTCATA-TA 27923 |||||||||||||||||||||| ||||| | || ||| |||| | || || || Sbjct 7394 ACCAACAAATCCATATTCAGCAAGTAAAGCAGGTGCAGAACATTTAGTTCAATCCTATTA 7335 Query 27924 TAGAATCATTTGATATGAATATCAAAATAATTCGCTGTAATAATGTTTATGGTCCAAATC 27983 || |||||||| | || | | | ||||| | | ||||||| | ||||| ||||| | Sbjct 7334 TA-AATCATTTAAATTGCCTGTAATAATAACTAGAGCTAATAATATATATGGCCCAAAAC 7276 Query 27984 AATACCCGGAGAAACTCATTCCAAAGTTTATAA 28016 |||| || || ||| | || ||||| ||||||| Sbjct 7275 AATATCCTGAAAAAATTATACCAAAATTTATAA 7243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628018089091200