Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20citrinum_20[genbank_20GCA_5F000286055.1_202012-11- 01] 1,772 sequences; 26,251,846 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq319 279 6e-70 seq642 98.7 1e-15 seq174 91.5 2e-13 seq36 86.0 7e-12 seq97 84.2 3e-11 >seq319 Length=25483 Score = 279 bits (308), Expect = 6e-70 Identities = 1138/1770 (64%), Gaps = 68/1770 (4%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 ||||| ||||||| ||||| || | || ||||| ||||| |||||||||||||||| Sbjct 6650 CCACAACACATGTTGATGCGTGTTTCAATTGGTATCCATGGCGAAGACATTGATTCTGCT 6709 Query 104282 TTGGAGACATACGACAAGATGTCCCAAGGTA-TGTTCATTCACGCAACACCAACCCTCTT 104340 | | |||||| | | | | | || | | |||| ||| || ||||||||| | || Sbjct 6710 ATCAACACATAC-AAACGTTTATCAGAGAAATTATTCACTCATGCCACACCAACCTTATT 6768 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAA-CAAGGAGG 104399 |||||| ||||||||| ||| |||||||| ||| || |||| | || || |||| Sbjct 6769 CAATGCAGGTACACCATCACCACAAATGTCTTCTTG-TTTCTTAGTTCAAATGAAAGAGG 6827 Query 104400 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 104459 | |||||| | |||||||| | || | | | || || | ||||||||| | |||| Sbjct 6828 ATTCAATCGATGGTATCTACGATACCTTGAAACAATGCGCACTCATCTCAAAGAGTGCTG 6887 Query 104460 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAA 104519 | |||||||| || | | ||| | | | || | || | |||||| || || | Sbjct 6888 GTGGTATTGGTATTGCCGTTCATAAAATTCGTGCTGCTCAAAGTTATATTCGTGGTACCA 6947 Query 104520 ATGGT-CAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 104578 ||||| | | || ||||| | | ||||||||||| || || || | || || || || Sbjct 6948 ATGGTACTAGCA-ATGGTTTGGTACCAATGCTTCGTGTTTTCAATGATACTGCTCGTTAC 7006 Query 104579 GTAAATCAAGCTG--GGC-GTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCAC 104635 || |||||| || ||| |||| || | | || || || | |||||||||||| Sbjct 7007 GTCGATCAAGGTGGTGGCAAGAGAAAAGGTGCCTTTGCCGTTTACTTGGAGCCATGGCAC 7066 Query 104636 GCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAA------GGTGACGAGGAGGCG 104689 || ||| || | || ||| |||| |||||| || ||| | |||||| | Sbjct 7067 GCCGATGTCTTTGAATTCATTGA------TCTCAAGAAAAACACTGGTAAAGAGGAGATG 7120 Query 104690 CGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAG 104749 | | || || |||| || || ||| | ||| |||| ||| || | || || Sbjct 7121 AGAGCTAGAGACCTTTTCTATGCCCTTTGGGTCAGTGATATCTTTATGGAGCGTGTCGAA 7180 Query 104750 GAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTG 104809 | | ||| ||||| |||||||||||||| || | ||||| ||||| | || | Sbjct 7181 CAAAATGGTGATTGGGCTCTCTTTTGTCCAAACGAAGCACCAGGTCTTGCTGAAACTCAC 7240 Query 104810 GGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACG 104869 ||| | | || || ||| || || || | | || | || |||| Sbjct 7241 TCTGAACAACATCGTGCTCTCTACTTGAAATATGAAG-CCACACCAGGCCTACCAAGACG 7299 Query 104870 ----GTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTAC 104925 | |||| ||| | ||| || ||| | | |||||| || |||||||| Sbjct 7300 TATAATTAAAGCTCAAGATCTTTGGTTCGCCATTATGGAATCTCAAGTTGAAACTGGTAC 7359 Query 104926 ACCATACATGCTTTACAAAGACGCCTGTAA--CCAAAAGAGTAATCAAAAGAATTTGGGT 104983 ||||| ||| | || || || || || || ||||| |||||||||||||| ||| Sbjct 7360 ACCATTCATCTTGTATAAGGATGCTTGCAATGCCAAA--TCCAATCAAAAGAATTTAGGT 7417 Query 104984 GTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACG 105043 || | ||| ||||| |||||||||||| | ||| |||| |||||| | Sbjct 7418 ACCATTAGTAGTAGTAATCTTTGTACAGAAATCATTCAATATACATCACCAGATGAAATT 7477 Query 105044 GCTGTGTGTAACCTCGCATCAATCGCTCTCCC----------------CAAGTATGTGGA 105087 || || ||||| ||||| || ||||| || || ||| | || | Sbjct 7478 GCCGTTTGTAATCTCGCCTCTATCGCACTTCCAAAATTCATTCGTCAAAAAGCAGGTTCA 7537 Query 105088 TCCAGAGACAAAGA-----CATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTC 105142 ||| ||||| |||||| || || ||| ||| | || ||| || Sbjct 7538 ACCAATCCAAAAGAGTTTGAATTTGACCATCAATTCCTCTTTGAAATCACCAAATTAATC 7597 Query 105143 ACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTT---GAGACTGCTCGT 105199 || ||| || || | |||||| | || | ||| || ||| ||| ||| Sbjct 7598 ACAGTAAATCTTAATGTTATCATTGATCGTAACTATTATCCAGTTATCGAG---GCTAAA 7654 Query 105200 AAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTC 105259 | || ||| | ||||| |||||||||||| | ||| |||| ||| | || ||||| ||| Sbjct 7655 ACCTCAAATCTTAGACATCGTCCAATTGGTATTGGTATTCAAGGTTTAGCAGATGTTTTC 7714 Query 105260 ATTCTTTGTCGCCACGCATTT-GATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATT 105318 ||| || | || ||| ||| | | || || | |||| || Sbjct 7715 ATTAAAATGCG-TATGCCTTTCGATAGTGTTGCCGCTGCCAAATTAAATGTTGAAATCGC 7773 Query 105319 TGAGACCATGTATCACGCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCC 105378 ||| ||||| ||| ||| ||| | || | || ||||| | ||||||||| Sbjct 7774 TGAAACCATTTATTTCGCTGCTTTAACAGCCTCTCATGAATTGGCCGTTCGTGATGGTCC 7833 Query 105379 ATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGA 105438 |||||| | || | || || |||||||| |||| | ||||||| |||||||| ||| Sbjct 7834 TTATGAATCTTTCCAAGGCTCACCAGCTTCTAAAGGTATCCTTCAATATGATATGT-GGA 7892 Query 105439 AGGTGAGACCAAGCTTCAC-TACGACTGGGA-AGCTCTCAAGGA-ACG--CATCAAGGAG 105493 | || | |||||| ||||| | || | ||| || | ||||| | | | |||| | Sbjct 7893 ATGTTACACCAAG-TTCACGTTGGAATTGGACAGAATTAAAGGATAAGATCGTCAATAAA 7951 Query 105494 AAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATC 105553 ||| | |||||| ||| | || || ||||||||||| || || || |||||| Sbjct 7952 GGTGGTTTACGTAACTCACTCTTAATTGCACCAATGCCAACCGCTTCAACAAGTCAAATC 8011 Query 105554 TTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTC 105613 | ||||| |||||||| |||||||| ||||| | || || || | | | Sbjct 8012 CTTGGTAACAATGAATGTTTTGAACCATACACTTCAAATATTTACAGTCGTCGTGTTTTA 8071 Query 105614 GCGGGAGAGTTTGTGATTGTCAACAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTC 105673 || || || || |||||||| || || | | || || |||| ||| | ||| | Sbjct 8072 GCTGGTGAATTCACAATTGTCAATAAACAATTACTAGAGGATCTCATGGAGTTGGGTATT 8131 Query 105674 TGGTCCAAGGATATGAAGGATCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTG 105733 ||| | || |||||| | | || | ||| |||||||||||||| |||| Sbjct 8132 TGGACACCAGAGATGAAGAACCAAATCATTGCAGCACGTGGTTCCATTCAATCCATTGGT 8191 Query 105734 GATATTCCAAATGAAATTAAGAAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGA- 105792 | || || ||||| | || | | || || ||||||||||| | ||| | Sbjct 8192 GGCATCCCTGATGAATTGAAAGAACTCTATAAAACTGTTTGGGAAAT-TCGTCAAAGAAC 8250 Query 105793 TGTCATTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCT 105852 | ||||||| |||||||| ||||||||| ||||| |||||||| |||||| | ||| | Sbjct 8251 TCTCATTGATATGGCCGCTGATCGTGGTGCTTTCATCGATCAAAGCCAAAGTTTCAATGT 8310 Query 105853 CTTCATGGAAAGTCCAACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAA 105912 ||||| | | ||||| | |||| ||| | |||||||| | ||| |||| ||| Sbjct 8311 TTTCATTGCAGAACCAACCTTTGCCAAACTCACCTCTATGCATTTCTACTCATGGAGGAA 8370 Query 105913 GGGTCTCAAAACGGGGATGTATTACCTCCG 105942 ||| | || || || ||||| || ||||| Sbjct 8371 AGGTTTAAAGACTGGTATGTACTATCTCCG 8400 >seq642 Length=17076 Score = 98.7 bits (108), Expect = 1e-15 Identities = 328/502 (65%), Gaps = 15/502 (3%) Strand=Plus/Plus Query 9526 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9585 ||| || | ||| || | ||| | || | ||| | |||||| | ||| || ||||| Sbjct 10887 ATCGAATCTACCAGGTCTAAGTAATGCTTTATCCAAGATATCGGGTCTATTGGTTGCGGC 10946 Query 9586 GATGACAACAATACCTGTTTCATTA--TCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9643 | || |||| | | ||||| | | ||||||||||| || ||| | |||||| Sbjct 10947 AAGCACCACAA--CGTTTTTCAATGGTTTGAAACCATCCATTTCAACCAACAATTGGTTC 11004 Query 9644 ATAGTTTGTTCCCGTTCATCATTCG---CTGGCATACCACCAGCACTGCGTTGCTTTCCC 9700 | || | || |||||||| || | | | | |||||| || | | ||| | || Sbjct 11005 AATGTATTCTCACGTTCATCGTTTGAACCAGAGAAACCACCTTTACCTC-TAGCTCTACC 11063 Query 9701 A-CGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAA 9759 | | ||||| || ||||||||||| || || |||||| ||| | | ||| |||||| Sbjct 11064 AACAGCATCGATTTCATCAATGAATACAATACATGGTGCATTCTTTCTAGCTTGTTCAAA 11123 Query 9760 GAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG--CGGCG 9817 | ||| | ||||| | || ||||||||||||||||| || || | || | | Sbjct 11124 TAAATCTCTAACACGTGATGGACCAACACCAACAAACATCTCTACGAAATCTGAACCACT 11183 Query 9818 GAACATTGGAT-GAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTT 9876 | ||| || ||| || ||||| | ||||| || ||||| || | | || || Sbjct 11184 G---GTTGAATAGAATGGTACATTTGCCTCACCAGCTGTGGCTTTAGCAATCAATGTTTT 11240 Query 9877 ACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAA 9936 ||| |||||||| || | | | ||||||| ||| ||||| || ||| | || Sbjct 11241 ACCAGTACCTGGTGGTCCTACTAAAATTGCACCTCTTGGTATCTTTGCACCAATGTCATG 11300 Query 9937 GTATCTCTCAGGTTGCTTAAGAAAATCCACAATTTCTTCCAATTCATCTTTGGCGGCGTC 9996 | || ||| || | ||| | ||| | |||| |||||| | ||| |||| || | | Sbjct 11301 GAATTTCTTTGGATTCTTTAAAAAGTTTACAAATTCTTCAATCTCAACTTTAGCTTCACC 11360 Query 9997 AATCCCCTCAACATCGGTAAAC 10018 || || | ||||| ||||| Sbjct 11361 AAGACCTGCTACATCACTAAAC 11382 >seq174 Length=33651 Score = 91.5 bits (100), Expect = 2e-13 Identities = 197/288 (68%), Gaps = 9/288 (3%) Strand=Plus/Plus Query 9517 GATCTTACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATT 9576 ||| | |||||| || | |||||||||||| | || ||| | | |||| ||||| Sbjct 12536 GATTTGACGATCGAATCTACCTGGACGAAGTAATGCTGGATCCAATACATCACTACGATT 12595 Query 9577 CGTCGCGGCGATGACAACAATACCTGT--TTCATTATCAAAACCATCCATCTCTGTCAAA 9634 || | |||| ||||| | ||| | || | | |||||||||||||| ||| Sbjct 12596 GGTACCAGCGAATACAACCACACCAGAGGTTGAGG--CGAAACCATCCATCTCGACCAAT 12653 Query 9635 AGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGC 9694 | ||| || | || | || | |||||||| ||| | ||||||| | |||| Sbjct 12654 AATTGATTCAATGTATTCTCTCTCTCATCATTA--TGGAA-ACCACCACGTGATC-TTGC 12709 Query 9695 TTTCCCA-CGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGAC 9753 | | ||| | ||||| || ||||||||||| || ||||| ||| |||| | || || | Sbjct 12710 TCTACCAACAGCATCGATTTCATCAATGAATACAATGCAAGGTGTATTTGCACGTGCTTC 12769 Query 9754 TTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTC 9801 || ||||||||| | ||||| | || |||||||||||||| || Sbjct 12770 TTTAAAGAGATCTCTAACACGAGATGGACCAACACCAACAAACATTTC 12817 >seq36 Length=55639 Score = 86.0 bits (94), Expect = 7e-12 Identities = 120/168 (71%), Gaps = 3/168 (2%) Strand=Plus/Minus Query 169051 TGTATAGAATGACTTGGATTGAG---AACCTTTGGATGCCTTGATAATTGGTGTCACCAT 169107 |||| |||||||||| ||||| ||| ||||| |||||| ||||||||||| || | Sbjct 15224 TGTAAAGAATGACTTCTTTTGAGTTGAACTTTTGGTTGCCTTTATAATTGGTGTAACAAA 15165 Query 169108 AGACACAACAAAACCCAACTTGAGAAGACTTGGCCAGAAGTAGTGAATCATATTGAGAAT 169167 | || ||||| || | |||| ||||||| ||||| ||||| | ||||| || Sbjct 15164 TTCTTCTACGAAACCACGTTTCAAAAGAGTTGGCCAAAAGTAATGAATGAAATTGATAAC 15105 Query 169168 GAGACCCTTGATGTGGGAACCGTCGTTATCGGCATCCGTCATGATCAT 169215 | ||| || || || ||||| || | ||| ||| | ||| ||||| Sbjct 15104 TAAACCTTTTATATGCGAACCATCATGATCTTGATCAGCCATAATCAT 15057 >seq97 Length=39634 Score = 84.2 bits (92), Expect = 3e-11 Identities = 211/319 (66%), Gaps = 4/319 (1%) Strand=Plus/Plus Query 9695 TTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACT 9754 ||||| || ||||| |||||||| ||||| | |||||| ||||| ||||| || || | Sbjct 6838 TTTCCAACAGCATCGATCTCATCGATGAAAATGATGCAAGGTTGTTTTTCACGTGCTGCA 6897 Query 9755 TCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCG 9814 |||| | || || ||||| | || ||||| ||| | |||| |||| | | Sbjct 6898 GCAAACAATTCACGAACACGACGTGAACCAACACCGACATATTTCTCATCAAAACTACTG 6957 Query 9815 GCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTC 9874 | | | || ||| | ||| || ||||| || ||||||| || | | ||| Sbjct 6958 CCAGTGGTGTAGAGGAAAGAAACACCAGCCTCACCTGCGATGGCTCTTGCTAACAAAGTT 7017 Query 9875 TTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCA 9934 ||||| |||||||||| ||| | ||| | ||||| ||| | ||||| ||| | Sbjct 7018 TTACCAGTACCTGGCTCACCAGAGAGTAAAACACCTTTTGGTAATTTGGCACCAATATTG 7077 Query 9935 AAGTATCTCTCAGGTTGCTTAAGAAAA--TCCACAATTTCTTCCAATTCATCTTTGGCGG 9992 |||| | || || ||| ||| || || ||||||||||| || ||||| | Sbjct 7078 TTGTATTTGGTTGGATG--TAATAAATAGTCAACGATTTCTTCCAACTCTTCTTTAACCT 7135 Query 9993 CGTCAATCCCCTCAACATC 10011 | | ||| || | |||||| Sbjct 7136 CTTGAATACCTTTAACATC 7154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583247880773280