Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20citrinum_20[genbank_20GCA_5F000286055.1_202012-11- 01] 1,772 sequences; 26,251,846 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq102 158 1e-33 seq1199 143 3e-29 seq641 143 3e-29 seq90 118 1e-21 seq319 82.4 9e-11 >seq102 Length=41085 Score = 158 bits (174), Expect = 1e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||| || || || || ||||||||||| || | ||||| || || Sbjct 161 ATGCAAATCTTTGTTAAAACTCTCACTGGCAAGACTATCACCTTAGAGGTCGAAGGTAGT 220 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| |||| | || || || ||||| ||||| || || ||||| ||||| || Sbjct 221 GATAACATTGAAAATGTTAAAGCCAAGATTCAAGACAAAGAAGGTATTCCACCAGATCAA 280 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | ||||||| |||||||| ||| | || |||| |||||| || | || || ||| Sbjct 281 CAAAGATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTTTCTGATTACAAT 340 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTT 27617 ||||||| |||||||||||||| |||| || Sbjct 341 ATCCAAAAAGAATCCACTCTTCACTTAGTTTT 372 Score = 150 bits (166), Expect = 2e-31 Identities = 155/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||| || || || || || ||||| || || | ||||| || || Sbjct 617 ATGCAAATCTTTGTTAAAACCCTCACTGGAAAGACCATCACCTTAGAGGTCGAAGGTAGT 676 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| |||| | || || || ||||| ||||| || || ||||| ||||| || Sbjct 677 GATAACATTGAAAATGTTAAAGCCAAGATTCAAGACAAAGAAGGTATTCCACCAGATCAA 736 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| ||||| |||||||| ||| | || |||| |||||| || | || || || Sbjct 737 CAACGTCTCATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGATTACAAC 796 Query 27586 GTCCAAAAGGAATCCACTCTTCA 27608 ||||||| |||||||||||||| Sbjct 797 ATCCAAAAAGAATCCACTCTTCA 819 Score = 129 bits (142), Expect = 7e-25 Identities = 153/206 (74%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG- 27464 |||||||||||||| || || || || || || || || || | || ||||| ||| Sbjct 389 ATGCAAATCTTTGTTAAAACTCTCACTGGTAAAACCATCACCTTGGAAGTTGA---AGGT 445 Query 27465 --TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 ||||| |||| |||| | ||||| || ||||| ||||| || || ||||| ||||| Sbjct 446 TCTGATAATATTGAAAATGTCAAGGCCAAGATTCAAGACAAAGAAGGTATTCCACCAGAT 505 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 || || | ||||||| |||||||| ||| | || |||| ||||| || | || || Sbjct 506 CAACAAAGATTAATTTTCGCTGGTAAACAATTAGAAGATGGCCGTACTCTCTCTGATTAC 565 Query 27583 AATGTCCAAAAGGAATCCACTCTTCA 27608 || ||||||| |||||||||||||| Sbjct 566 AACATCCAAAAAGAATCCACTCTTCA 591 Score = 93.3 bits (102), Expect = 5e-14 Identities = 106/140 (76%), Gaps = 2/140 (1%) Strand=Plus/Plus Query 27477 AAATTTGAAGGCTAAAATTC-AGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAA 27535 |||| | ||||| |||| || | || || || || ||||| ||||| || || | ||| Sbjct 2 AAATGTCAAGGCCAAAAATCCAAGATAAAGAAGGTATTCCACCAGATCAACAAAGATTAA 61 Query 27536 TTTTT-GCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594 ||||| |||||||||||| | || |||| ||||| || | || || || ||||||| Sbjct 62 TTTTTCGCTGGTAAGCAATTAGAAGATGGCCGTACTCTCTCTGATTACAACATCCAAAAA 121 Query 27595 GAATCCACTCTTCATCTAGT 27614 ||||||||||| ||| |||| Sbjct 122 GAATCCACTCTCCATTTAGT 141 >seq1199 Length=11192 Score = 143 bits (158), Expect = 3e-29 Identities = 156/206 (76%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||| || || || || || || || || || | || || || |||| Sbjct 1177 ATGCAAATCTTTGTTAAAACTCTCACTGGTAAAACCATCACATTAGAAGTCGA---AGGT 1121 Query 27466 ---GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 |||| ||||| |||| | || || |||||||| || || || || ||||| |||||| Sbjct 1120 TCAGATAACATTGAAAATGTTAAAGCCAAAATTCAAGATAAAGAAGGTATTCCACCAGAC 1061 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 || || ||||| ||||| |||||||| ||| | || |||| |||||| || | || || Sbjct 1060 CAACAACGTCTCATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTTTCTGATTAC 1001 Query 27583 AATGTCCAAAAGGAATCCACTCTTCA 27608 || ||||||| |||||||||||||| Sbjct 1000 AACATCCAAAAAGAATCCACTCTTCA 975 Score = 127 bits (140), Expect = 2e-24 Identities = 158/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||| || || || || || || || || || | || || || |||| Sbjct 949 ATGCAAATCTTTGTAAAAACTCTCACTGGTAAAACCATCACATTAGAAGTCGA---AGGT 893 Query 27466 ---GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 |||| ||||| |||| | || || ||||| || || || || || || || ||||| Sbjct 892 TCAGATAACATTGAAAATGTCAAAGCCAAAATCCAAGATAAAGAAGGTATCCCACCAGAT 833 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 || || | |||||||||| ||||| ||| | || |||| |||||| || |||| || Sbjct 832 CAACAAAGATTAATTTTTGCAGGTAAACAATTAGAAGATGGTCGTACTTTATCAGATTAC 773 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTT 27617 ||| ||||||| |||||||| || ||| |||| || Sbjct 772 AATATCCAAAAAGAATCCACACTCCATTTAGTTTT 738 >seq641 Length=13309 Score = 143 bits (158), Expect = 3e-29 Identities = 154/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||| || || || || || || || ||||| || || ||||| || Sbjct 13198 ATGCAAATTTTTGTTAAAACCCTCACTGGTAAAACCATTACACTCGAAGTTGAAGGTAGT 13139 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | |||| | ||||||||||| || || || || || ||||||||||| || Sbjct 13138 GACAACATCGAAAATGTAAAGGCTAAAATCCAAGATAAAGAAGGTATTCCTCCAGATCAA 13079 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| ||||| || ||||| ||| | || |||| ||||| || | || |||||| Sbjct 13078 CAACGTCTCATTTTCGCAGGTAAACAATTGGAAGATGGCCGTACTCTCTCTGATTATAAT 13019 Query 27586 GTCCAAAAGGAATCCACTCTTCAT 27609 ||||||| ||||| ||||| ||| Sbjct 13018 ATCCAAAAAGAATCAACTCTCCAT 12995 Score = 125 bits (138), Expect = 8e-24 Identities = 152/205 (74%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||| || || | || || |||||||| |||||||| ||||| || | Sbjct 12970 ATGCAAATCTTTGTTAAAACATTAACTGGTAAGACTATCACTCTTGAAGTTGAA--AGCT 12913 Query 27466 --GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACC 27523 |||| |||| |||| | || | || ||||| || || || || ||||| ||||| | Sbjct 12912 CAGATAATATTGAAAATGTTAAAACAAAGATTCAAGATAAAGAAGGTATTCCACCAGATC 12853 Query 27524 AGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATA 27583 | || | | ||||| || ||||| ||| | || |||| |||||| || | || || | Sbjct 12852 AACAAAGATTGATTTTCGCAGGTAAACAATTGGAAGATGGTCGTACTCTTTCTGATTACA 12793 Query 27584 ATGTCCAAAAGGAATCCACTCTTCA 27608 | | |||||||||||||||||||| Sbjct 12792 ACATTCAAAAGGAATCCACTCTTCA 12768 Score = 109 bits (120), Expect = 6e-19 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||| || || || || || || || ||||| || || ||||| || Sbjct 12742 ATGCAAATCTTTGTTAAAACCCTCACTGGTAAAACCATTACACTCGAAGTTGAAGGTAGT 12683 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| ||| | || || || || || || || || || ||||| ||||| || Sbjct 12682 GATAACATTGAGAATGTTAAAGCCAAGATCCAAGATAAAGAAGGTATTCCACCAGATCAA 12623 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| ||||| || ||||| ||| | || |||| |||||| || | || || || Sbjct 12622 CAACGTCTCATTTTCGCAGGTAAACAATTGGAAGATGGTCGTACTCTTTCTGATTACAAC 12563 Query 27586 GTCCAAAA 27593 | ||||| Sbjct 12562 ATTCAAAA 12555 >seq90 Length=44396 Score = 118 bits (130), Expect = 1e-21 Identities = 156/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || || || | || || || || || ||||| || ||||| |||| Sbjct 14206 ATGCAAATCTTCGTTAAAACCTTAACTGGTAAAACCATCACTCTCGAAGTTGA---AGGT 14262 Query 27466 ---GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || | ||| | ||| | || || || ||||| ||||| || || || || ||||| Sbjct 14263 TCAGACAACATCGAAAACGTCAAAGCCAAGATTCAAGACAAAGAAGGTATCCCACCAGAT 14322 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 || || ||||| || ||||| ||||| ||| | || |||| |||||| || | || ||| Sbjct 14323 CAACAACGTCTTATCTTTGCCGGTAAACAATTAGAAGATGGTCGTACTTTATCCGATTAT 14382 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTT 27617 || ||||||||||||| || || || |||| || Sbjct 14383 AACATCCAAAAGGAATCAACCCTCCACTTAGTTTT 14417 >seq319 Length=25483 Score = 82.4 bits (90), Expect = 9e-11 Identities = 132/185 (71%), Gaps = 6/185 (3%) Strand=Plus/Minus Query 80035 CGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATA 80094 || || || ||||||||||| || ||||| | || ||| |||| ||| | |||||| Sbjct 8406 CGAGTACGGAGATAGTACATACCAGTCTTTAAACCTTTCCTCCATGAGTAGAAATGCATA 8347 Query 80095 GAACTGAGCTTCGCAAGTGTGGGGTTCT-CCATGAAGATGTTCAGAGACTGAGAC--TGA 80151 || |||| || |||| || |||||| | ||||| | || || ||| | | ||| Sbjct 8346 GAGGTGAGTTTGGCAAAGGT-TGGTTCTGCAATGAAAACATT--GAAACTTTGGCTTTGA 8290 Query 80152 CAGATGAAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCAT 80211 ||||||||| |||||||| || ||||| ||||| | | |||| |||||||||| Sbjct 8289 TCGATGAAAGCACCACGATCAGCGGCCATATCAATGAGAGTTCTTTGACGAATTTCCCAA 8230 Query 80212 ACTGT 80216 || || Sbjct 8229 ACAGT 8225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570297767624640