Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20citrinum_20[genbank_20GCA_5F000286055.1_202012-11- 01] 1,772 sequences; 26,251,846 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq641 114 8e-21 seq90 104 1e-17 >seq641 Length=13309 Score = 114 bits (126), Expect = 8e-21 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 ||||| || |||||| |||||||||||||| ||||| ||||| || || | ||||| Sbjct 12762 ACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAATCAGAAAGAGTACGACCATCTTCC 12821 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 | ||||||||| || || || || | ||||| || || || | || || || ||| || Sbjct 12822 AATTGTTTACCTGCGAAAATCAATCTTTGTTGATCTGGTGGAATACCTTCTTTATCT-TG 12880 Query 34618 ATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 | ||||||||||| | ||| | ||| ||| || ||||| | || || || || Sbjct 12881 AATCTTTGTTTTAACATTTTCAATATTATCTGAGCTTTCAACTTCAAGAGTGATAGTCTT 12940 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| ||||| ||||| ||||| || ||||| Sbjct 12941 ACCAGTTAATGTTTTAACAAAGATTTGCAT 12970 Score = 86.0 bits (94), Expect = 4e-12 Identities = 149/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 |||||||||||||| || ||||| || |||||||| || || || || | ||||| Sbjct 12990 ACCAAATGGAGAGTTGATTCTTTTTGGATATTATAATCAGAGAGAGTACGGCCATCTTCC 13049 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 | ||||||||| || || || | ||| ||||| || || || | || || || ||| | Sbjct 13050 AATTGTTTACCTGCGAAAATGAGACGTTGTTGATCTGGAGGAATACCTTCTTTATCTTGG 13109 Query 34618 ATCTTTTGTTTTAACGAT---AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTT 34674 || ||| | || || | | |||| || | || || ||||| | || || ||| Sbjct 13110 AT-TTTAGCCTTTACATTTTCGATGTTGTCACTAC-CT-TCAACTTCGAGTGTAATGGTT 13166 Query 34675 TTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || | ||||| |||||||| ||||| Sbjct 13167 TTACCAGTGAGGGTTTTAACAAAAATTTGCAT 13198 Score = 84.2 bits (92), Expect = 1e-11 Identities = 136/191 (71%), Gaps = 6/191 (3%) Strand=Plus/Plus Query 34519 TTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATT 34578 ||||||||||| ||||| ||||| || || | ||||| | ||||||||| || || || Sbjct 12555 TTTTGAATGTTGTAATCAGAAAGAGTACGACCATCTTCCAATTGTTTACCTGCGAAAATG 12614 Query 34579 AAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT--- 34635 | ||| ||||| || || || | || || || ||| |||| || | |||||| | Sbjct 12615 AGACGTTGTTGATCTGGTGGAATACCTTCTTTATCTTGGATC-TTGGCTTTAACATTCTC 12673 Query 34636 AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACA 34695 || || | || | || || ||||| | || || |||||||| || | ||||| ||| Sbjct 12674 AATGTTATCACTAC-CT-TCAACTTCGAGTGTAATGGTTTTACCAGTGAGGGTTTTAACA 12731 Query 34696 AAAATCTGCAT 34706 || || ||||| Sbjct 12732 AAGATTTGCAT 12742 >seq90 Length=44396 Score = 104 bits (114), Expect = 1e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34495 AACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCT 34554 || || || ||||| || |||||||| ||||||||||| || | || || | ||| Sbjct 14417 AAAACTAAGTGGAGGGTTGATTCCTTTTGGATGTTATAATCGGATAAAGTACGACCATCT 14358 Query 34555 TCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCT 34614 || | ||||||||||||||| || | ||| ||||| || || || | || || |||||| Sbjct 14357 TCTAATTGTTTACCGGCAAAGATAAGACGTTGTTGATCTGGTGGGATACCTTCTTTGTCT 14298 Query 34615 GTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGT 34673 ||| || | ||| ||| | || ||||| | || ||||| | || || || Sbjct 14297 -TGAATCTTGGCTTTGACGTTTTCGATGTTGTCTGAACCTTCAACTTCGAGAGTGATGGT 14239 Query 34674 TTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGAT 34712 |||||| ||||| ||||| || || || ||||| ||||| Sbjct 14238 TTTACCAGTTAAGGTTTTAACGAAGATTTGCATCTTGAT 14200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314722803020876