Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20citrinum_20[genbank_20GCA_5F000286055.1_202012-11- 01] 1,772 sequences; 26,251,846 total letters Query= NC_028672.1 Length=149732 Score E Sequences producing significant alignments: (Bits) Value seq1 154 1e-32 >seq1 Length=107950 Score = 154 bits (170), Expect = 1e-32 Identities = 262/379 (69%), Gaps = 3/379 (1%) Strand=Plus/Plus Query 24286 ATGTCGTCAAAGACGATCGACGGATCTGCCAGGATGTTACGGATGATATGGGTGTATGAG 24345 ||| | || ||||| || |||||| ||| || || || || |||||||| | Sbjct 64326 ATGCCATCGAAGACAATGCTCGGATCATCCACCATACCGCGAATAATGTGGGTGTAGCTG 64385 Query 24346 CGAGAGTGGATAGTCTCACTGAACGCCCAAGTCTCTACCCATGTTTCCAGGGTTGTGTCG 24405 || ||| || || ||| ||||| ||| || || ||||| ||||| || || Sbjct 64386 CGGCTGTGAATGGTTTCAGAGAACGACCATGTTTCCACCCACGTTTCGAGCTCTGGAATT 64445 Query 24406 GACACGATCGGGAGCAGAACTGCGTTCGGCCCACGGCCCTGTACAGAATCCAGAAGGATC 24465 || | | ||| ||||| |||||| || | || ||||| || |||||||| || || Sbjct 64446 GAAATAAGCGGCAGCAGCGTTGCGTTTGGGCTGCGTCCCTGAACGGAATCCAGCAGAGTC 64505 Query 24466 TGGTACTTCAGGTTGCTGATGAAGATGTGCTTCTCGTGATCCGGCAGATTCATGTAG--- 24522 ||||| |||||||| | ||| |||||| ||| || || |||| || | | | Sbjct 64506 TGGTAACGGAGGTTGCTCAGGAAAATGTGCCGCTCATGCTCTTGCAGCTTAGTATTGAAA 64565 Query 24523 TCGATACGGTCACGGGTCACGTTAACTTCTTCCGGACGCCAGAAGAACGCCAGTTGCTTC 24582 ||||| || || ||| | || ||||||||||| ||||||||||| | || || || Sbjct 64566 TCGATGCGATCGGTGGTTATGTCGACTTCTTCCGGGCGCCAGAAGAAGGAGAGCTGTTTT 64625 Query 24583 TCGATCAGCTTCTCGAACTTGGCGTGTTTCTGCTGGTCATAGCGAGAAACGTTCGGTGTC 24642 ||||||||||| ||||| | | || |||||||| || ||||| | |||||| | | Sbjct 64626 TCGATCAGCTTTTCGAAATCGCGGTACTTCTGCTGATCGTAGCGCGCAACGTTGACAGAC 64685 Query 24643 TCGCCGAGGAACATCGGCT 24661 | ||||||||||| |||| Sbjct 64686 TGCCCGAGGAACATAGGCT 64704 Score = 125 bits (138), Expect = 7e-24 Identities = 280/416 (67%), Gaps = 6/416 (1%) Strand=Plus/Plus Query 25045 TGGTAATACAGCGTCTTCAGTCCGTGCTTATACGCCCACATAATGTCGCGCAGCACAACC 25104 |||||||| |||||||||| || |||| ||| || | | | || |||| | Sbjct 64981 TGGTAATAAAGCGTCTTCACGCCTTGCTGATAAGCGAAGAGCAGATCTTCAAGCAACTTC 65040 Query 25105 TTGATCGGCAGCTTACCGCCAGGGAAATCCCAAGGCTTGTAGAAGGTATTCGCCGACGCA 25164 | || || | ||| |||| ||||| ||| | ||| ||| || || || | Sbjct 65041 ATCATTGGAACCTTGTCGCCCGGGAAGCGAGTAGGGTCATAGTTGGTGTTGGCTGAAATA 65100 Query 25165 GCTTGGTCGATGAACTTCTGCATGATCGCTACGAGGGTCAGGTACGGAATAGGTGAAGC- 25223 || ||||| | ||||||||| |||||||| || |||||| || | ||| | | Sbjct 65101 GCCTGGTCAAAGAACTTCTGAATGATCGCAACTTTGGTCAGATA--GCCGCGGTTATCCG 65158 Query 25224 -CATATCCCACTTGTACTCGTAAACCACGCTCGGGTCACCAACGCCTGGCACCAACACTG 25282 ||||||||| ||||||||| | || | ||| ||| | | || |||| || | Sbjct 65159 GCATATCCCAAAGGTACTCGTACTGATCTTTCAGCTCAGCAAAGTCCGGAACCACCATTT 65218 Query 25283 GCAGCATACCCGCTCCGGATTTCTTGAAGGAAATCGCATCACGAGGTGGCTCAAAACCGT 25342 || || || || |||| || | ||||| | | |||| || || || | ||| | Sbjct 65219 TCACAATGCCGTCTTTGGATGATTTCACGGAAACAGGACCACGCGGCGGTTCGATACCAT 65278 Query 25343 TCGTGGAGTTGGTAATCTGACTGGACGTCTCGCAAGGCATCATCGTGGACAGCGTAGAGT 25402 | ||||||||||| || || |||||||| ||||| |||||| | | ||| ||||||| Sbjct 65279 TTGTGGAGTTGGTGATTTGGCTGGACGTTTCGCACGGCATCTGAGCTGTCAGGGTAGAGT 65338 Query 25403 TACGCAGTCCATGAATAGCG-ATGTCGATACGCAGCTTTTCCCAATCCATCTTCAG 25457 ||||||| |||| | | ||| ||| | ||||||| ||||||| ||| ||||| Sbjct 65339 TACGCAGACCAT-ATTCGCGTATGCGGTCGCGCAGCTCTTCCCAAGGCATTTTCAG 65393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479003789831040