Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20citrinum_20[genbank_20GCA_5F000286055.1_202012-11- 01] 1,772 sequences; 26,251,846 total letters Query= NC_028820.1 Length=162101 Score E Sequences producing significant alignments: (Bits) Value seq1 102 8e-17 seq722 91.5 2e-13 >seq1 Length=107950 Score = 102 bits (112), Expect = 8e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 140122 GGGCTGAACAACGTGATGTAATCGTTTTTAATCAGACGTTCAATCATGAGGTCGTTAATT 140181 |||||||||| ||| || | ||||| | ||| || | ||| ||| ||| || Sbjct 66109 GGGCTGAACAGCGTAATATTCTCGTTGCGTACCAGGCGGCGATACATCAGGCGGTTGATC 66168 Query 140182 TGAACACCATAATCTAGGTGGCGAATACGGTTTTCATCAACACCTTTATTGTTCTTCAGT 140241 || ||||| || || || |||| |||||| || || | || || ||||||| | Sbjct 66169 ATTACGCCATAGTCCAGATGACGAACACGGTTCTCCTCGATGCCGCGGTTATTCTTCAAT 66228 Query 140242 ACGAGCAGGTTTTCTACTTCAAGATGCCAAATCGGATAGTACAAAGTAGCTGCGCCACCG 140301 || ||||| |||| ||||| ||||||||||| || ||| | || ||||||||||| Sbjct 66229 ACCAGCAGACTTTCAACTTCCAGATGCCAAATAGGGTAGAAAGCCGTCGCTGCGCCACCT 66288 Query 140302 CGAATGCCGCCTTGAGAACAAGATTTAACAG 140332 |||| ||| || || || || ||||| |||| Sbjct 66289 CGAACGCCACCCTGCGAGCATGATTTCACAG 66319 >seq722 Length=14880 Score = 91.5 bits (100), Expect = 2e-13 Identities = 155/221 (70%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 61758 TTATTTGTAGGCACCCATCGTGCCAGTTTTAAATACATTAATTACTCGTTTAGCACGATT 61817 ||| || |||||| | | || ||||||||||||||| | ||||||| || | |||||| Sbjct 5765 TTAATTATAGGCATCAAGTGTACCAGTTTTAAATACACTGATTACTCTGTTTGAACGATT 5824 Query 61818 TGGCGTCTGTTTAAACCATTTAGA-TTGGGCAAGGTTCAA-AGCAGCTTGGTCCCACTGT 61875 ||| || || ||| ||| ||| || ||| ||||| || || | ||||||| Sbjct 5825 TGGAGTTTGCTTATTCCAAGAAGAGTTTTTCAA--TTCAACAGATGCATCTTCCCACTTC 5882 Query 61876 TTTGCTTTAAGTAGTTTAATAGAGTTATTAAATCCAGCAACGCCAGCAACACCCATTTGG 61935 ||| ||| || || ||||| || || |||||| | ||| ||| |||| | ||| Sbjct 5883 TTTTCTTCAATTAATTTAAGGGATTTTTTAAATTTTGAAACACCATTTTCACCTAATTGA 5942 Query 61936 AATACCATATTCACTAAAGCCATTTGTCTTATAGGGTCTAA 61976 || |||||||| || |||||||| | |||| ||||| Sbjct 5943 AAAACCATATTTGTCAATGCCATTTGACGAATAGAATCTAA 5983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 518583713116320