Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20citrinum_20[genbank_20GCA_5F000286055.1_202012-11- 01] 1,772 sequences; 26,251,846 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq1199 104 2e-17 seq102 93.3 3e-14 seq641 89.7 4e-13 >seq1199 Length=11192 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| |||||||| ||||| ||| || ||| | || |||||| | | Sbjct 949 ATGCAAATCTTTGTAAAAACTCTCACTGGTAAAACCATCACATTAGAAGTCGAAGGTTCA 890 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 || | | || |||||| ||||| || ||||||||| | || || || Sbjct 889 GATAACATTGAAAATGTCAAAGCCAAAATCCAAGATAAAGAAGGTATCCCACCAGATCAA 830 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 ||| | ||||||||||| || |||||||| || || | || | || || |||||||| Sbjct 829 CAAAGATTAATTTTTGCAGGTAAACAATTAGAAGATGGTCGTACTTTATCAGATTACAAT 770 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTTTT 28001 ||||||||||| ||| | ||||| ||||| Sbjct 769 ATCCAAAAAGAATCCACACTCCATTTAGTTTT 738 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| |||||||| ||||| ||| || ||| | || |||||| | | Sbjct 1177 ATGCAAATCTTTGTTAAAACTCTCACTGGTAAAACCATCACATTAGAAGTCGAAGGTTCA 1118 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 || | | || || ||| ||||| || ||||||||| |||| || || Sbjct 1117 GATAACATTGAAAATGTTAAAGCCAAAATTCAAGATAAAGAAGGTATTCCACCAGACCAA 1058 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 ||||| | ||||| || || |||||||| || || | || | | || ||||||||| Sbjct 1057 CAACGTCTCATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTTTCTGATTACAAC 998 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 ||||||||||| |||| | || ||||| Sbjct 997 ATCCAAAAAGAATCCACTCTTCACTTGGT 969 >seq102 Length=41085 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| |||||||| ||||| ||| || || | || || ||| | | Sbjct 389 ATGCAAATCTTTGTTAAAACTCTCACTGGTAAAACCATCACCTTGGAAGTTGAAGGTTCT 448 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 || || | || ||||| || || |||||||||||| |||| || || Sbjct 449 GATAATATTGAAAATGTCAAGGCCAAGATTCAAGACAAAGAAGGTATTCCACCAGATCAA 508 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 ||| | |||||||| || || |||||||| || || | || | | || ||||||||| Sbjct 509 CAAAGATTAATTTTCGCTGGTAAACAATTAGAAGATGGCCGTACTCTCTCTGATTACAAC 568 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 ||||||||||| |||| | || ||||| Sbjct 569 ATCCAAAAAGAATCCACTCTTCACTTGGT 597 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| |||||||| ||||| || ||| || | || |||||| | | Sbjct 161 ATGCAAATCTTTGTTAAAACTCTCACTGGCAAGACTATCACCTTAGAGGTCGAAGGTAGT 220 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 || | | || || ||| || || |||||||||||| |||| || || Sbjct 221 GATAACATTGAAAATGTTAAAGCCAAGATTCAAGACAAAGAAGGTATTCCACCAGATCAA 280 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 ||| | |||||||| || || |||||||| || || | || | | || |||||||| Sbjct 281 CAAAGATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTTTCTGATTACAAT 340 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTTTT 28001 ||||||||||| |||| | || || ||||| Sbjct 341 ATCCAAAAAGAATCCACTCTTCACTTAGTTTT 372 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| ||||| || ||||| || || || | || |||||| | | Sbjct 617 ATGCAAATCTTTGTTAAAACCCTCACTGGAAAGACCATCACCTTAGAGGTCGAAGGTAGT 676 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 || | | || || ||| || || |||||||||||| |||| || || Sbjct 677 GATAACATTGAAAATGTTAAAGCCAAGATTCAAGACAAAGAAGGTATTCCACCAGATCAA 736 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 ||||| | ||||| || || |||||||| || || | || | | || ||||||||| Sbjct 737 CAACGTCTCATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGATTACAAC 796 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTT 27999 ||||||||||| |||| | || |||||| Sbjct 797 ATCCAAAAAGAATCCACTCTTCACTTGGTT 826 >seq641 Length=13309 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| ||||| | ||||| || ||| || |||| || |||||| | Sbjct 12970 ATGCAAATCTTTGTTAAAACATTAACTGGTAAGACTATCACTCTTGAAGTTGAAAGCTCA 12911 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 || || | || || ||| ||| || || ||||||||| |||| || || Sbjct 12910 GATAATATTGAAAATGTTAAAACAAAGATTCAAGATAAAGAAGGTATTCCACCAGATCAA 12851 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 ||| | || ||||| || || ||||||||||| || | || | | || ||||||||| Sbjct 12850 CAAAGATTGATTTTCGCAGGTAAACAATTGGAAGATGGTCGTACTCTTTCTGATTACAAC 12791 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 || ||||| || |||| | || ||||| Sbjct 12790 ATTCAAAAGGAATCCACTCTTCACTTGGT 12762 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| ||||| || ||||| ||| |||||| | || || ||| | | Sbjct 13198 ATGCAAATTTTTGTTAAAACCCTCACTGGTAAAACCATTACACTCGAAGTTGAAGGTAGT 13139 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 ||| | | || || || ||||| || ||||||||| |||| || || Sbjct 13138 GACAACATCGAAAATGTAAAGGCTAAAATCCAAGATAAAGAAGGTATTCCTCCAGATCAA 13079 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 ||||| | ||||| || || ||||||||||| || | || | | || ||||| || Sbjct 13078 CAACGTCTCATTTTCGCAGGTAAACAATTGGAAGATGGCCGTACTCTCTCTGATTATAAT 13019 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 ||||||||||| ||| | |||||||| Sbjct 13018 ATCCAAAAAGAATCAACTCTCCATTTGGT 12990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355854714706644