Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20citrinum_20[genbank_20GCA_5F000286055.1_202012-11- 01] 1,772 sequences; 26,251,846 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq641 150 4e-31 seq1199 147 5e-30 seq102 147 5e-30 seq90 138 3e-27 >seq641 Length=13309 Score = 150 bits (166), Expect = 4e-31 Identities = 163/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| ||||| | |||||||||||| || ||||| ||||| ||||| | ||| || | || Sbjct 12755 TCTGAGGACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAATCAGAAAGAGTACGACC 12814 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||||| || || |||||||| || | | |||||| || || |||| ||||| || Sbjct 12815 ATCTTCCAATTGTTTACCTGCGAAAATCAATCTTTGTTGATCTGGTGGAATACCTTCTTT 12874 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 || || |||||| ||| || ||||| || | || ||||||||||| || |||||||| Sbjct 12875 ATCTTGAATCTTTGTTTTAACATTTTCAATATTATCTGAGCTTTCAACTTCAAGAGTGAT 12934 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || | || || ||||| | ||||| Sbjct 12935 AGTCTTACCAGTTAATGTTTTAACAAAGATTTGCAT 12970 Score = 141 bits (156), Expect = 2e-28 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| || || | || ||||| || ||||||||||| |||||||| | || || | || Sbjct 12983 TCTGAGTACCAAATGGAGAGTTGATTCTTTTTGGATATTATAATCAGAGAGAGTACGGCC 13042 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||||| || || |||||||| || || |||||||| || ||||||| ||||| || Sbjct 13043 ATCTTCCAATTGTTTACCTGCGAAAATGAGACGTTGTTGATCTGGAGGAATACCTTCTTT 13102 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 || ||||| || || || ||||||||| ||||| | |||||| ||||| || || Sbjct 13103 ATCTTGGATTTTAGCCTTTACATTTTCGATGTTGTCACTACCTTCAACTTCGAGTGTAAT 13162 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || ||||| || || ||||| | ||||| Sbjct 13163 GGTTTTACCAGTGAGGGTTTTAACAAAAATTTGCAT 13198 >seq1199 Length=11192 Score = 147 bits (162), Expect = 5e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| ||||| | |||||||||||| |||||||||||||| ||||| | ||| || | || Sbjct 962 TCTGAGGACCAAGTGAAGAGTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGTACGACC 1021 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||| | || || || ||||| || || ||||||||||| || |||| ||||| || Sbjct 1022 ATCTTCTAATTGTTTACCAGCGAAAATGAGACGTTGTTGGTCTGGTGGAATACCTTCTTT 1081 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 || || || || ||| || ||||| ||| | || || | ||| || || | ||||| Sbjct 1082 ATCTTGAATTTTGGCTTTAACATTTTCAATGTTATCTGAACCTTCGACTTCTAATGTGAT 1141 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || |||||||| || ||||| | ||||| Sbjct 1142 GGTTTTACCAGTGAGAGTTTTAACAAAGATTTGCAT 1177 Score = 105 bits (116), Expect = 2e-17 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||||| || | || || ||||| ||||||||||| || ||||| | | || | || Sbjct 734 TCTTAAAACTAAATGGAGTGTGGATTCTTTTTGGATATTGTAATCTGATAAAGTACGACC 793 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||| | || || ||||| || || | | |||||| || || || | ||||| || Sbjct 794 ATCTTCTAATTGTTTACCTGCAAAAATTAATCTTTGTTGATCTGGTGGGATACCTTCTTT 853 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 || ||||| || ||| || ||||| ||| | || || | ||| || || | ||||| Sbjct 854 ATCTTGGATTTTGGCTTTGACATTTTCAATGTTATCTGAACCTTCGACTTCTAATGTGAT 913 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || |||||||| |||||||| | ||||| Sbjct 914 GGTTTTACCAGTGAGAGTTTTTACAAAGATTTGCAT 949 Score = 102 bits (112), Expect = 2e-16 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||||| || | || || ||||| ||||||||||| || ||||| | | || | || Sbjct 1190 TCTTAAAACTAAATGGAGTGTGGATTCTTTTTGGATATTGTAATCTGATAAAGTACGACC 1249 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||| | || || || ||||| || || ||||||||||| || || | ||||| || Sbjct 1250 ATCTTCTAATTGTTTACCAGCGAAAATGAGACGTTGTTGGTCTGGTGGGATACCTTCTTT 1309 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 || || || || ||| || ||||| ||| | || || | |||||| || | ||||| Sbjct 1310 ATCTTGAATTTTGGCTTTAACATTTTCAATGTTATCTGAACCTTCAACTTCCAATGTGAT 1369 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || | || || ||||| | ||||| Sbjct 1370 GGTTTTACCAGTTAATGTTTTAACAAAAATTTGCAT 1405 >seq102 Length=41085 Score = 147 bits (162), Expect = 5e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| || || | |||||||||||| |||||||||||||| ||||| | || || | || Sbjct 832 TCTGAGAACCAAGTGAAGAGTGGATTCTTTTTGGATGTTGTAATCAGAGAGAGTACGACC 773 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||| | || || || ||||| || || |||||||| || || |||| ||||| || Sbjct 772 ATCTTCTAATTGTTTACCAGCGAAAATGAGACGTTGTTGATCTGGTGGAATACCTTCTTT 713 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 ||| || ||||| ||| || ||||| ||| | ||| | ||| ||||| | ||||| Sbjct 712 GTCTTGAATCTTGGCTTTAACATTTTCAATGTTATCACTACCTTCGACCTCTAAGGTGAT 653 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||||| ||||| || || ||||| | ||||| Sbjct 652 GGTCTTTCCAGTGAGGGTTTTAACAAAGATTTGCAT 617 Score = 138 bits (152), Expect = 3e-27 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||||| || | |||||||||||| ||||||||||| || ||||| | ||| || | || Sbjct 376 TCTTAAAACTAAGTGAAGAGTGGATTCTTTTTGGATATTGTAATCAGAAAGAGTACGACC 317 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||| | || || || ||||| || | | |||||| || || |||| ||||| || Sbjct 316 ATCTTCTAATTGTTTACCAGCGAAAATTAATCTTTGTTGATCTGGTGGAATACCTTCTTT 257 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 ||| || ||||| ||| || ||||| ||| | ||| | ||| ||||| | ||||| Sbjct 256 GTCTTGAATCTTGGCTTTAACATTTTCAATGTTATCACTACCTTCGACCTCTAAGGTGAT 197 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || |||||||| || ||||| | ||||| Sbjct 196 AGTCTTGCCAGTGAGAGTTTTAACAAAGATTTGCAT 161 Score = 138 bits (152), Expect = 3e-27 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| ||||| | |||||||||||| |||||||||||||| ||||| | || || | || Sbjct 604 TCTGAGGACCAAGTGAAGAGTGGATTCTTTTTGGATGTTGTAATCAGAGAGAGTACGGCC 545 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||| | || || || ||||| || | | |||||| || || |||| ||||| || Sbjct 544 ATCTTCTAATTGTTTACCAGCGAAAATTAATCTTTGTTGATCTGGTGGAATACCTTCTTT 485 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 ||| || ||||| || || ||||| || | ||||| | |||||| || | ||||| Sbjct 484 GTCTTGAATCTTGGCCTTGACATTTTCAATATTATCAGAACCTTCAACTTCCAAGGTGAT 425 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || |||||||| || ||||| | ||||| Sbjct 424 GGTTTTACCAGTGAGAGTTTTAACAAAGATTTGCAT 389 >seq90 Length=44396 Score = 138 bits (152), Expect = 3e-27 Identities = 162/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||||| || | ||| || || || || ||||||||||||||||| | | || | || Sbjct 14421 TCTTAAAACTAAGTGGAGGGTTGATTCCTTTTGGATGTTATAATCGGATAAAGTACGACC 14362 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||| | || || || || |||||||| |||||||| || || || | ||||| || Sbjct 14361 ATCTTCTAATTGTTTACCGGCAAAGATAAGACGTTGTTGATCTGGTGGGATACCTTCTTT 14302 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 ||| || ||||| ||| |||||||||||| |||| || | |||||| ||||||||||| Sbjct 14301 GTCTTGAATCTTGGCTTTGACGTTTTCGATGTTGTCTGAACCTTCAACTTCGAGAGTGAT 14242 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || || | || || || || | ||||| || Sbjct 14241 GGTTTTACCAGTTAAGGTTTTAACGAAGATTTGCATCTT 14203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159125682902780