Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20citrinum_20[genbank_20GCA_5F000286055.1_202012-11- 01] 1,772 sequences; 26,251,846 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq1199 154 4e-32 seq102 143 6e-29 seq641 132 1e-25 seq6 118 3e-21 >seq1199 Length=11192 Score = 154 bits (170), Expect = 4e-32 Identities = 166/217 (76%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||| ||||| | ||| ||||||||||||||||||| |||||||| | | ||| | || Sbjct 962 TCTGAGGACCAAGTGAAGAGTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGTACGACC 1021 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||||| || || |||||||| || || ||||||||||| || ||||||||||| || Sbjct 1022 ATCTTCTAATTGTTTACCAGCGAAAATGAGACGTTGTTGGTCTGGTGGAATACCTTCTTT 1081 Query 225618 GTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGA 225676 ||||| || ||| || || ||| ||| ||| | ||||| ||| || ||||| |||| Sbjct 1082 ATCTTGAAT-TTTGGCTTTAACATTTTCAATGTTATCTGAACCTTCGACTTCTAATGTGA 1140 Query 225677 TCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 | || || || || | |||||| | || | |||||| Sbjct 1141 TGGTTTTACCAGTGAGAGTTTTAACAAAGATTTGCAT 1177 Score = 145 bits (160), Expect = 2e-29 Identities = 156/204 (76%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 ||||| |||||||||||||||| ||||||||| | ||||| | |||||||||| || Sbjct 1203 TGGAGTGTGGATTCTTTTTGGATATTGTAATCTGATAAAGTACGACCATCTTCTAATTGT 1262 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || |||||||| || || ||||||||||| || || |||||||| || ||||| || ||| Sbjct 1263 TTACCAGCGAAAATGAGACGTTGTTGGTCTGGTGGGATACCTTCTTTATCTTGAAT-TTT 1321 Query 225631 TGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 || || ||| ||| ||| | ||||| ||| || || || ||||| || || || || Sbjct 1322 GGCTTTAACATTTTCAATGTTATCTGAACCTTCAACTTCCAATGTGATGGTTTTACCAGT 1381 Query 225690 CAAAGTTTTTATGAACACTTGCAT 225713 || ||||| | || | |||||| Sbjct 1382 TAATGTTTTAACAAAAATTTGCAT 1405 Score = 140 bits (154), Expect = 8e-28 Identities = 155/204 (76%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 ||||| |||||||||||||||| ||||||||| | ||||| | |||||||||| || Sbjct 747 TGGAGTGTGGATTCTTTTTGGATATTGTAATCTGATAAAGTACGACCATCTTCTAATTGT 806 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || || || || | || |||||| || || || |||||||| || |||||||| ||| Sbjct 807 TTACCTGCAAAAATTAATCTTTGTTGATCTGGTGGGATACCTTCTTTATCTTGGAT-TTT 865 Query 225631 TGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 || || ||| ||| ||| | ||||| ||| || ||||| ||||| || || || || Sbjct 866 GGCTTTGACATTTTCAATGTTATCTGAACCTTCGACTTCTAATGTGATGGTTTTACCAGT 925 Query 225690 CAAAGTTTTTATGAACACTTGCAT 225713 | |||||||| || | |||||| Sbjct 926 GAGAGTTTTTACAAAGATTTGCAT 949 >seq102 Length=41085 Score = 143 bits (158), Expect = 6e-29 Identities = 154/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569 ||| ||||||||||||||||||| ||||||||| | | ||| | |||||||||| || Sbjct 364 GTGAAGAGTGGATTCTTTTTGGATATTGTAATCAGAAAGAGTACGACCATCTTCTAATTG 305 Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 || |||||||| || | || |||||| || || ||||||||||| |||||||| ||||| Sbjct 304 TTTACCAGCGAAAATTAATCTTTGTTGATCTGGTGGAATACCTTCTTTGTCTTGAATCTT 245 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 || ||| ||| ||| | || ||| || ||||| ||||| |||||||| || Sbjct 244 GGCTTTAACATTTTCAATGTTATCACTACCTTCGACCTCTAAGGTGATAGTCTTGCCAGT 185 Query 225690 CAAAGTTTTTATGAACACTTGCAT 225713 | |||||| | || | |||||| Sbjct 184 GAGAGTTTTAACAAAGATTTGCAT 161 Score = 141 bits (156), Expect = 2e-28 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||| ||||| | ||| ||||||||||||||||||| |||||||| | | ||| | || Sbjct 604 TCTGAGGACCAAGTGAAGAGTGGATTCTTTTTGGATGTTGTAATCAGAGAGAGTACGGCC 545 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||||| || || |||||||| || | || |||||| || || ||||||||||| || Sbjct 544 ATCTTCTAATTGTTTACCAGCGAAAATTAATCTTTGTTGATCTGGTGGAATACCTTCTTT 485 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 |||||| ||||| ||| ||| ||| || | || || ||| || || || ||||| Sbjct 484 GTCTTGAATCTTGGCCTTGACATTTTCAATATTATCAGAACCTTCAACTTCCAAGGTGAT 425 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || || | |||||| | || | |||||| Sbjct 424 GGTTTTACCAGTGAGAGTTTTAACAAAGATTTGCAT 389 Score = 138 bits (152), Expect = 3e-27 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||| || || | ||| ||||||||||||||||||| |||||||| | | ||| | || Sbjct 832 TCTGAGAACCAAGTGAAGAGTGGATTCTTTTTGGATGTTGTAATCAGAGAGAGTACGACC 773 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||||| || || |||||||| || || |||||||| || || ||||||||||| || Sbjct 772 ATCTTCTAATTGTTTACCAGCGAAAATGAGACGTTGTTGATCTGGTGGAATACCTTCTTT 713 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 |||||| ||||| || ||| ||| ||| | || ||| || ||||| ||||| Sbjct 712 GTCTTGAATCTTGGCTTTAACATTTTCAATGTTATCACTACCTTCGACCTCTAAGGTGAT 653 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || || | ||||| | || | |||||| Sbjct 652 GGTCTTTCCAGTGAGGGTTTTAACAAAGATTTGCAT 617 Score = 113 bits (124), Expect = 1e-19 Identities = 108/137 (79%), Gaps = 1/137 (1%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||| || || | |||||||||||||||||||||| |||||||| | | ||| | || Sbjct 148 TCTGAGAACTAAATGGAGAGTGGATTCTTTTTGGATGTTGTAATCAGAGAGAGTACGGCC 89 Query 225558 ATCTTCTAGCTGCTTCCCAGCG-AAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCT 225616 |||||||| ||||| |||||| || || | || |||||| || || ||||||||||| | Sbjct 88 ATCTTCTAATTGCTTACCAGCGAAAAATTAATCTTTGTTGATCTGGTGGAATACCTTCTT 29 Query 225617 TGTCTTGGATCTTTTGC 225633 | |||||||| ||| || Sbjct 28 TATCTTGGATTTTTGGC 12 >seq641 Length=13309 Score = 132 bits (146), Expect = 1e-25 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||| ||||| | ||| ||||||||||| ||||| | |||||||| | | ||| | || Sbjct 12755 TCTGAGGACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAATCAGAAAGAGTACGACC 12814 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||| | || || || ||||| || | || |||||| || || ||||||||||| || Sbjct 12815 ATCTTCCAATTGTTTACCTGCGAAAATCAATCTTTGTTGATCTGGTGGAATACCTTCTTT 12874 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 ||||| |||||| || ||| ||| || | |||||| |||| || || | ||||| Sbjct 12875 ATCTTGAATCTTTGTTTTAACATTTTCAATATTATCTGAGCTTTCAACTTCAAGAGTGAT 12934 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || || || ||||| | || | |||||| Sbjct 12935 AGTCTTACCAGTTAATGTTTTAACAAAGATTTGCAT 12970 Score = 114 bits (126), Expect = 3e-20 Identities = 119/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||| || || | |||||||| ||||||||||||| ||| ||||| | | ||| | || Sbjct 12983 TCTGAGTACCAAATGGAGAGTTGATTCTTTTTGGATATTATAATCAGAGAGAGTACGGCC 13042 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||| | || || || ||||| || || |||||||| || || ||||||||||| || Sbjct 13043 ATCTTCCAATTGTTTACCTGCGAAAATGAGACGTTGTTGATCTGGAGGAATACCTTCTTT 13102 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTC 225653 |||||||| || ||| ||| ||||||| |||| Sbjct 13103 ATCTTGGATTTTAGCCTTTACATTTTCGATGTTGTC 13138 >seq6 Length=61224 Score = 118 bits (130), Expect = 3e-21 Identities = 97/118 (82%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| ||||| ||||||||||| || |||| |||||| || ||||| || |||||||| || Sbjct 4735 GAAAATTTGTCCATCAGTAATTGAAATAATATTTGTTGGAATATATGCTGAAACATCTCC 4794 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATTTTTATTT 4587 |||||||||||| |||| || || ||||||| |||||||| ||| | |||| |||| Sbjct 4795 TGCTTGTGTTTCTACAATTGGGAATGCTGTTAATGATCCACATCCATATTTTTCATTT 4852 Score = 107 bits (118), Expect = 5e-18 Identities = 106/136 (78%), Gaps = 1/136 (1%) Strand=Plus/Plus Query 7737 GGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTTC 7796 ||||||||| || | ||| ||||||||||| ||||| ||||| |||| ||| ||| Sbjct 52340 GGTAAGATTTTTCGTGTTGTATCAAATTAATGAACATAATCCACTGCTTGCGCAAAGTTC 52399 Query 7797 CGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATATTT-ACGCG 7855 ||||| || | |||||||| || |||||| ||||| |||||||| ||| | ||| ||| | Sbjct 52400 CGTCAATTACCTTGAGTTTCAATCTTGCGATCGTACTACTCAGGCGGAGTGTTTAACGTG 52459 Query 7856 TTAGCTTAATTAATAT 7871 ||| || || || ||| Sbjct 52460 TTAACTAAAATACTAT 52475 Score = 84.2 bits (92), Expect = 5e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 5031 GCCCCATACACAGGTTGTGTTATAGGAGAATATTTTAGAGATAATGGTAAACATGCTTTA 5090 || ||||| ||||| ||| ||| ||||||||||| ||||| | || |||||||| ||| Sbjct 5052 GCACCATATACAGGATGTACTATTGGAGAATATTTCCGAGATGAAGGAAAACATGCGTTA 4993 Query 5091 ATCATCTACGATGATTTAAGTAAACA 5116 || | || ||||||||||||||||| Sbjct 4992 ATTGTATATGATGATTTAAGTAAACA 4967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192504125069768