Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20citrinum_20[genbank_20GCA_5F000286055.1_202012-11- 01] 1,772 sequences; 26,251,846 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq1199 93.3 3e-14 seq641 87.8 1e-12 >seq1199 Length=11192 Score = 93.3 bits (102), Expect = 3e-14 Identities = 162/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 || |||| |||||||| || | || | || ||||||||||| ||||||||||| | Sbjct 1179 CCACCTCTTAATCTTAAAACTAAATGGAGTGTGGATTCTTTTTGGATATTGTAATCTGAT 1238 Query 101072 ATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGC 101131 | ||| |||||| |||||||| || || | || || | |||||||||| || Sbjct 1239 AAAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATGAGACGTTGTTGGTCTGGTGGG 1298 Query 101132 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTT--G 101189 | |||||||| || |||||| ||| |||| || || | | || || || Sbjct 1299 ATACCTTCTTTATCTTGAATTTTGGCTTTAACAT-TTTCAATGT-TATCTGAACCTTCAA 1356 Query 101190 TTTCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCATTAT 101241 ||| | || || ||||| || || |||||||||| |||||||||||| || Sbjct 1357 CTTCCAATGTGATGGTTTTACCAGTTAATGTTTTAACAAAAATTTGCATAAT 1408 Score = 82.4 bits (90), Expect = 6e-11 Identities = 159/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 101010 TGCCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGG 101069 |||| |||| ||||| | |||| ||| | ||| ||||||||||| || |||||||| | Sbjct 949 TGCCACCTCTTAATCTGAGGACCAAGTGAAGAGTGGATTCTTTTTGGATGTTGTAATCAG 1008 Query 101070 CCATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGG 101129 | ||| |||||| |||||||| || || | || || | |||||||||| | Sbjct 1009 AAAGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATGAGACGTTGTTGGTCTGGTG 1068 Query 101130 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTT- 101188 | | |||||||| || |||||| ||| |||| || || | | || || || Sbjct 1069 GAATACCTTCTTTATCTTGAATTTTGGCTTTAACAT-TTTCAATGT-TATCTGAACCTTC 1126 Query 101189 -GTTTCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 ||| | || || ||||| || || | ||||||| ||| |||||||| Sbjct 1127 GACTTCTAATGTGATGGTTTTACCAGTGAGAGTTTTAACAAAGATTTGCAT 1177 >seq641 Length=13309 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 || |||| ||||| | |||| ||| | ||| ||||| |||||||| |||||||| | Sbjct 12744 CCACCTCTTAATCTGAGGACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAATCAGAA 12803 Query 101072 ATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGC 101131 | ||| ||||||||||||||| || || | || | |||||||| ||| || Sbjct 12804 AGAGTACGACCATCTTCCAATTGTTTACCTGCGAAAATCAATCTTTGTTGATCTGGTGGA 12863 Query 101132 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTT--G 101189 | |||||||| || ||| ||| ||| |||| | | | |||| | | || Sbjct 12864 ATACCTTCTTTATCTTGAATCTTTGTTTTAACATTTTCAATATTATCTGAG--CTTTCAA 12921 Query 101190 TTTCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 ||| | || ||||| || || || |||||||||| ||| |||||||| Sbjct 12922 CTTCAAGAGTGATAGTCTTACCAGTTAATGTTTTAACAAAGATTTGCAT 12970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409651952862948