Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20citrinum_20[genbank_20GCA_5F000286055.1_202012-11- 01] 1,772 sequences; 26,251,846 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq1199 134 3e-26 seq90 129 1e-24 seq102 116 9e-21 seq641 111 4e-19 >seq1199 Length=11192 Score = 134 bits (148), Expect = 3e-26 Identities = 169/231 (73%), Gaps = 1/231 (0%) Strand=Plus/Plus Query 151889 TCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCC 151948 ||||||||| | |||||||| || |||||||||||||||||||| | | ||| | || Sbjct 962 TCTGAGGACCAAGTGAAGAGTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGTACGACC 1021 Query 151949 ATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTT 152008 |||||||| ||| || ||||| || || | || ||||| | | || ||||| || Sbjct 1022 ATCTTCTAATTGTTTACCAGCGAAAATGAGACGTTGTTGGTCTGGTGGAATACCTTCTTT 1081 Query 152009 TTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAAT 152068 ||||||||||| ||| ||| | || | | | ||||||| || ||||| | || || Sbjct 1082 ATCTTGAATTTTGGCTTTAACATTTTCAATGTTATCTGAACCTTCGACTTCTAATGTGAT 1141 Query 152069 AGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTTACC-CTTACTCT 152118 ||||| || |||||||| || || |||| ||||| ||| |||| ||| Sbjct 1142 GGTTTTACCAGTGAGAGTTTTAACAAAGATTTGCATACCACCTCTTAATCT 1192 Score = 116 bits (128), Expect = 9e-21 Identities = 158/219 (72%), Gaps = 1/219 (0%) Strand=Plus/Plus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 ||| || || || ||||||||||| |||||||| | |||||| | |||||||||| Sbjct 746 ATGGAGTGTGGATTCTTTTTGGATATTGTAATCTGATAAAGTACGACCATCTTCTAATTG 805 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 ||| || || || || | || || || || | | ||| ||||| || ||||| ||||| Sbjct 806 TTTACCTGCAAAAATTAATCTTTGTTGATCTGGTGGGATACCTTCTTTATCTTGGATTTT 865 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 ||||||| | || | | | ||||||| || ||||| | || || ||||| || || Sbjct 866 GGCTTTGACATTTTCAATGTTATCTGAACCTTCGACTTCTAATGTGATGGTTTTACCAGT 925 Query 152081 GAGAGTCTTCACGAAGACCTGCATTTTACC-CTTACTCT 152118 |||||| || || |||| ||||| ||| |||| ||| Sbjct 926 GAGAGTTTTTACAAAGATTTGCATGCCACCTCTTAATCT 964 Score = 107 bits (118), Expect = 4e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 ||| || || || ||||||||||| |||||||| | |||||| | |||||||||| Sbjct 1202 ATGGAGTGTGGATTCTTTTTGGATATTGTAATCTGATAAAGTACGACCATCTTCTAATTG 1261 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 ||| || ||||| || || | || ||||| | | ||| ||||| || ||||||||||| Sbjct 1262 TTTACCAGCGAAAATGAGACGTTGTTGGTCTGGTGGGATACCTTCTTTATCTTGAATTTT 1321 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 ||| ||| | || | | | ||||||| || ||||| | || || ||||| || || Sbjct 1322 GGCTTTAACATTTTCAATGTTATCTGAACCTTCAACTTCCAATGTGATGGTTTTACCAGT 1381 Query 152081 GAGAGTCTTCACGAAGACCTGCAT 152104 | || || || || | ||||| Sbjct 1382 TAATGTTTTAACAAAAATTTGCAT 1405 >seq90 Length=44396 Score = 129 bits (142), Expect = 1e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTT 151961 || || || || || ||||||||||| ||||||| |||||| | |||||||||| | Sbjct 14408 TGGAGGGTTGATTCCTTTTGGATGTTATAATCGGATAAAGTACGACCATCTTCTAATTGT 14349 Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || ||||| |||||||| | || || || | | ||| ||||| || |||||||| || Sbjct 14348 TTACCGGCAAAGATAAGACGTTGTTGATCTGGTGGGATACCTTCTTTGTCTTGAATCTTG 14289 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 |||||| | || | | ||||||||| || ||||| ||||| || ||||| || || Sbjct 14288 GCTTTGACGTTTTCGATGTTGTCTGAACCTTCAACTTCGAGAGTGATGGTTTTACCAGTT 14229 Query 152082 AGAGTCTTCACGAAGACCTGCATTTT 152107 | || || ||||||| ||||| || Sbjct 14228 AAGGTTTTAACGAAGATTTGCATCTT 14203 >seq102 Length=41085 Score = 116 bits (128), Expect = 9e-21 Identities = 165/231 (71%), Gaps = 1/231 (0%) Strand=Plus/Minus Query 151889 TCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCC 151948 ||||||||| | |||||||| || |||||||||||||||||||| | | ||| | || Sbjct 604 TCTGAGGACCAAGTGAAGAGTGGATTCTTTTTGGATGTTGTAATCAGAGAGAGTACGGCC 545 Query 151949 ATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTT 152008 |||||||| ||| || ||||| || | || || || || | | || ||||| || Sbjct 544 ATCTTCTAATTGTTTACCAGCGAAAATTAATCTTTGTTGATCTGGTGGAATACCTTCTTT 485 Query 152009 TTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAAT 152068 |||||||| || |||||| | || | | || |||| || ||||| | || || Sbjct 484 GTCTTGAATCTTGGCCTTGACATTTTCAATATTATCAGAACCTTCAACTTCCAAGGTGAT 425 Query 152069 AGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTTACC-CTTACTCT 152118 ||||| || |||||||| || || |||| ||||| ||| |||| ||| Sbjct 424 GGTTTTACCAGTGAGAGTTTTAACAAAGATTTGCATACCACCTCTTAATCT 374 Score = 96.9 bits (106), Expect = 8e-15 Identities = 153/218 (70%), Gaps = 1/218 (0%) Strand=Plus/Minus Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTT 151961 |||||||| || ||||||||||| |||||||| | | ||| | |||||||||| | Sbjct 363 TGAAGAGTGGATTCTTTTTGGATATTGTAATCAGAAAGAGTACGACCATCTTCTAATTGT 304 Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || || ||||| || | || || || || | | || ||||| || |||||||| || Sbjct 303 TTACCAGCGAAAATTAATCTTTGTTGATCTGGTGGAATACCTTCTTTGTCTTGAATCTTG 244 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 ||| ||| | || | | | || || || || || | || ||||| ||||| ||| Sbjct 243 GCTTTAACATTTTCAATGTTATCACTACCTTCGACCTCTAAGGTGATAGTCTTGCCAGTG 184 Query 152082 AGAGTCTTCACGAAGACCTGCATTTTACC-CTTACTCT 152118 ||||| || || |||| ||||| ||| |||| ||| Sbjct 183 AGAGTTTTAACAAAGATTTGCATACCACCTCTTAATCT 146 Score = 93.3 bits (102), Expect = 1e-13 Identities = 160/231 (69%), Gaps = 1/231 (0%) Strand=Plus/Minus Query 151889 TCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCC 151948 |||||| || | |||||||| || |||||||||||||||||||| | | ||| | || Sbjct 832 TCTGAGAACCAAGTGAAGAGTGGATTCTTTTTGGATGTTGTAATCAGAGAGAGTACGACC 773 Query 151949 ATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTT 152008 |||||||| ||| || ||||| || || | || || || | | || ||||| || Sbjct 772 ATCTTCTAATTGTTTACCAGCGAAAATGAGACGTTGTTGATCTGGTGGAATACCTTCTTT 713 Query 152009 TTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAAT 152068 |||||||| || ||| ||| | || | | | || || || || || | || || Sbjct 712 GTCTTGAATCTTGGCTTTAACATTTTCAATGTTATCACTACCTTCGACCTCTAAGGTGAT 653 Query 152069 AGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTTACC-CTTACTCT 152118 || || || ||||| || || || |||| ||||| ||| |||| ||| Sbjct 652 GGTCTTTCCAGTGAGGGTTTTAACAAAGATTTGCATACCACCTCTTAATCT 602 >seq641 Length=13309 Score = 111 bits (122), Expect = 4e-19 Identities = 164/231 (71%), Gaps = 1/231 (0%) Strand=Plus/Plus Query 151889 TCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCC 151948 ||||||||| | |||||||| || || ||||| ||||||||||| | | ||| | || Sbjct 12755 TCTGAGGACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAATCAGAAAGAGTACGACC 12814 Query 151949 ATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTT 152008 |||||| | ||| || ||||| || | || || || || | | || ||||| || Sbjct 12815 ATCTTCCAATTGTTTACCTGCGAAAATCAATCTTTGTTGATCTGGTGGAATACCTTCTTT 12874 Query 152009 TTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAAT 152068 |||||||| ||| ||| ||| | || | | ||||| || || ||||||||||| || Sbjct 12875 ATCTTGAATCTTTGTTTTAACATTTTCAATATTATCTGAGCTTTCAACTTCAAGAGTGAT 12934 Query 152069 AGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTTACC-CTTACTCT 152118 ||| || || || | || || || |||| ||||| ||| |||| ||| Sbjct 12935 AGTCTTACCAGTTAATGTTTTAACAAAGATTTGCATACCACCTCTTAATCT 12985 Score = 93.3 bits (102), Expect = 1e-13 Identities = 160/231 (69%), Gaps = 1/231 (0%) Strand=Plus/Plus Query 151889 TCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCC 151948 |||||| || | ||| ||||| || ||||||||||| || ||||| | | ||| | || Sbjct 12983 TCTGAGTACCAAATGGAGAGTTGATTCTTTTTGGATATTATAATCAGAGAGAGTACGGCC 13042 Query 151949 ATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTT 152008 |||||| | ||| || ||||| || || | || || || | | || ||||| || Sbjct 13043 ATCTTCCAATTGTTTACCTGCGAAAATGAGACGTTGTTGATCTGGAGGAATACCTTCTTT 13102 Query 152009 TTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAAT 152068 ||||| ||||| || ||| | || | | |||| || || ||||| || ||||| Sbjct 13103 ATCTTGGATTTTAGCCTTTACATTTTCGATGTTGTCACTACCTTCAACTTCGAGTGTAAT 13162 Query 152069 AGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTTACC-CTTACTCT 152118 ||||| || ||||| || || || || | ||||| ||| |||| ||| Sbjct 13163 GGTTTTACCAGTGAGGGTTTTAACAAAAATTTGCATACCACCTCTTAATCT 13213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153794603941012