Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20citrinum_20[genbank_20GCA_5F000286055.1_202012-11- 01] 1,772 sequences; 26,251,846 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq90 163 6e-35 seq1199 143 6e-29 seq102 140 7e-28 seq641 131 4e-25 seq274 123 5e-23 >seq90 Length=44396 Score = 163 bits (180), Expect = 6e-35 Identities = 155/198 (78%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 ||| ||||||||||| || || | | || || ||||| |||| |||||| |||||||| Sbjct 14397 TTCCTTTTGGATGTTATAATCGGATAAAGTACGACCATCTTCTAATTGTTTACCGGCAAA 14338 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 ||| | ||||||||| || || ||||| || |||||||| ||||| ||||| ||| | Sbjct 14337 GATAAGACGTTGTTGATCTGGTGGGATACCTTCTTTGTCTTGAATCTTGGCTTTGACGTT 14278 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 ||||| |||| ||| |||| |||||||||||||| || ||||| || || || ||||| Sbjct 14277 TTCGATGTTGTCTGAACCTTCAACTTCGAGAGTGATGGTTTTACCAGTTAAGGTTTTAAC 14218 Query 283088 GAATATCTGCATTTTCAT 283105 ||| || ||||| || || Sbjct 14217 GAAGATTTGCATCTTGAT 14200 >seq1199 Length=11192 Score = 143 bits (158), Expect = 6e-29 Identities = 147/192 (77%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 |||||||||||||||||| |||| ||| || || ||||| |||| |||||| || || || Sbjct 986 TTCTTTTTGGATGTTGTAATCAGAAAGAGTACGACCATCTTCTAATTGTTTACCAGCGAA 1045 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 || | |||||||||||| |||||||| || || ||||| || || ||||| || | Sbjct 1046 AATGAGACGTTGTTGGTCTGGTGGAATACCTTCTTTATCTTGAATTTTGGCTTTAACATT 1105 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 || || | || ||| |||||||||| | ||||| || ||||| || | ||| ||||| Sbjct 1106 TTCAATGTTATCTGAACCTTCGACTTCTAATGTGATGGTTTTACCAGTGAGAGTTTTAAC 1165 Query 283088 GAATATCTGCAT 283099 || || ||||| Sbjct 1166 AAAGATTTGCAT 1177 Score = 116 bits (128), Expect = 8e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 |||||||||||| ||||| || | | || || ||||| |||| |||||| || ||||| Sbjct 758 TTCTTTTTGGATATTGTAATCTGATAAAGTACGACCATCTTCTAATTGTTTACCTGCAAA 817 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 || || | |||||| || || ||||| || || |||||||| || ||||| || | Sbjct 818 AATTAATCTTTGTTGATCTGGTGGGATACCTTCTTTATCTTGGATTTTGGCTTTGACATT 877 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 || || | || ||| |||||||||| | ||||| || ||||| || | ||| || || Sbjct 878 TTCAATGTTATCTGAACCTTCGACTTCTAATGTGATGGTTTTACCAGTGAGAGTTTTTAC 937 Query 283088 GAATATCTGCAT 283099 || || ||||| Sbjct 938 AAAGATTTGCAT 949 Score = 116 bits (128), Expect = 8e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 |||||||||||| ||||| || | | || || ||||| |||| |||||| || || || Sbjct 1214 TTCTTTTTGGATATTGTAATCTGATAAAGTACGACCATCTTCTAATTGTTTACCAGCGAA 1273 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 || | |||||||||||| || ||||| || || ||||| || || ||||| || | Sbjct 1274 AATGAGACGTTGTTGGTCTGGTGGGATACCTTCTTTATCTTGAATTTTGGCTTTAACATT 1333 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 || || | || ||| |||| ||||| | ||||| || ||||| || || || ||||| Sbjct 1334 TTCAATGTTATCTGAACCTTCAACTTCCAATGTGATGGTTTTACCAGTTAATGTTTTAAC 1393 Query 283088 GAATATCTGCAT 283099 || || ||||| Sbjct 1394 AAAAATTTGCAT 1405 >seq102 Length=41085 Score = 140 bits (154), Expect = 7e-28 Identities = 146/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 |||||||||||||||||| |||| || || |||||||| |||| |||||| || || || Sbjct 580 TTCTTTTTGGATGTTGTAATCAGAGAGAGTACGGCCATCTTCTAATTGTTTACCAGCGAA 521 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 || || | |||||| || |||||||| || |||||||| ||||| || || || | Sbjct 520 AATTAATCTTTGTTGATCTGGTGGAATACCTTCTTTGTCTTGAATCTTGGCCTTGACATT 461 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 || ||| | || ||| |||| ||||| | ||||| || ||||| || | ||| ||||| Sbjct 460 TTCAATATTATCAGAACCTTCAACTTCCAAGGTGATGGTTTTACCAGTGAGAGTTTTAAC 401 Query 283088 GAATATCTGCAT 283099 || || ||||| Sbjct 400 AAAGATTTGCAT 389 Score = 127 bits (140), Expect = 4e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| | || | || |||| || | ||| |||||||||||||||||| |||| Sbjct 844 ACCACCTCTCAATCTGAGAACCAAGTGAAGAGTGGATTCTTTTTGGATGTTGTAATCAGA 785 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || || ||||| |||| |||||| || || || || | ||||||||| || || Sbjct 784 GAGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATGAGACGTTGTTGATCTGGTGG 725 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||| || |||||||| ||||| ||||| || | || || | || | ||||||| Sbjct 724 AATACCTTCTTTGTCTTGAATCTTGGCTTTAACATTTTCAATGTTATCACTACCTTCGAC 665 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||||| ||||| || || | || ||||| || || ||||| Sbjct 664 CTCTAAGGTGATGGTCTTTCCAGTGAGGGTTTTAACAAAGATTTGCAT 617 Score = 125 bits (138), Expect = 1e-23 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 |||||||||||| ||||| |||| ||| || || ||||| |||| |||||| || || || Sbjct 352 TTCTTTTTGGATATTGTAATCAGAAAGAGTACGACCATCTTCTAATTGTTTACCAGCGAA 293 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 || || | |||||| || |||||||| || |||||||| ||||| ||||| || | Sbjct 292 AATTAATCTTTGTTGATCTGGTGGAATACCTTCTTTGTCTTGAATCTTGGCTTTAACATT 233 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 || || | || | ||||||| || | ||||| ||||| || || | ||| ||||| Sbjct 232 TTCAATGTTATCACTACCTTCGACCTCTAAGGTGATAGTCTTGCCAGTGAGAGTTTTAAC 173 Query 283088 GAATATCTGCAT 283099 || || ||||| Sbjct 172 AAAGATTTGCAT 161 Score = 89.7 bits (98), Expect = 1e-12 Identities = 87/111 (78%), Gaps = 1/111 (1%) Strand=Plus/Minus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGC-AA 282966 |||||||||||||||||| |||| || || |||||||| |||| ||| || || || || Sbjct 124 TTCTTTTTGGATGTTGTAATCAGAGAGAGTACGGCCATCTTCTAATTGCTTACCAGCGAA 65 Query 282967 AGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTG 283017 | || || | |||||| || |||||||| || || |||||||| |||| Sbjct 64 AAATTAATCTTTGTTGATCTGGTGGAATACCTTCTTTATCTTGGATTTTTG 14 >seq641 Length=13309 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 282888 AGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCC 282947 ||||||| ||| | || |||||||||||| || || |||| || || |||||||| Sbjct 12987 AGTACCAAATGGAGAGTTGATTCTTTTTGGATATTATAATCAGAGAGAGTACGGCCATCT 13046 Query 282948 TCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCT 283007 || | |||||| || || || || | ||||||||| || |||||||| || || ||| Sbjct 13047 TCCAATTGTTTACCTGCGAAAATGAGACGTTGTTGATCTGGAGGAATACCTTCTTTATCT 13106 Query 283008 TGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTC 283067 ||||| || || ||||| | ||||| |||| | |||| |||||||| || || || Sbjct 13107 TGGATTTTAGCCTTTACATTTTCGATGTTGTCACTACCTTCAACTTCGAGTGTAATGGTT 13166 Query 283068 TTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| || | || ||||| || || ||||| Sbjct 13167 TTACCAGTGAGGGTTTTAACAAAAATTTGCAT 13198 Score = 120 bits (132), Expect = 6e-22 Identities = 140/189 (74%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 282911 TTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGAT 282970 |||||| |||||||| |||| ||| || || ||||| || | |||||| || || || || Sbjct 12554 TTTTTGAATGTTGTAATCAGAAAGAGTACGACCATCTTCCAATTGTTTACCTGCGAAAAT 12613 Query 282971 CAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATC 283030 | ||||||||| || |||||||| || || ||||||||||| ||||| || | || Sbjct 12614 GAGACGTTGTTGATCTGGTGGAATACCTTCTTTATCTTGGATCTTGGCTTTAACATTCTC 12673 Query 283031 GATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || | || | |||| |||||||| || || || ||||| || | || ||||| || Sbjct 12674 AATGTTATCACTACCTTCAACTTCGAGTGTAATGGTTTTACCAGTGAGGGTTTTAACAAA 12733 Query 283091 TATCTGCAT 283099 || ||||| Sbjct 12734 GATTTGCAT 12742 >seq274 Length=24667 Score = 123 bits (136), Expect = 5e-23 Identities = 257/379 (68%), Gaps = 8/379 (2%) Strand=Plus/Plus Query 43983 CCAAGCGTCGACATCGGAGTTGTACGGAAAGGTTCAGGAGATTCCTCAAACAGAAAGGAC 44042 |||||| || || || || || || || |||||||| |||||||| ||| |||| | || Sbjct 263 CCAAGCTTCAACCTCTGAATTATATGGTAAGGTTCAAGAGATTCCACAATCAGAGACCAC 322 Query 44043 TCCGTTTTATCCCCGGAGTCCATATGGTGTGGCGAAGCTATATGCCTATTGGAT--TTGT 44100 || || ||||| || ||||| | ||| || || | ||||||||||||||| |||| Sbjct 323 ACCATTCTATCCACGTTCACCATACGCTGTAGCAAAACAATATGCCTATTGGATCGTTGT 382 Query 44101 AAAAATTATCGCGAGTCGTATGGGATGTTCGTTTGTAATTCGATTTGTTTCAATCACGAA 44160 ||| ||||| ||| | || | |||| || |||||| || | ||||| || ||| Sbjct 383 --AAACTATCGTGAGGCATACGATATGTACGCATGTAATGGTATCTTATTCAACCATGAA 440 Query 44161 AGTCCCAAC--AGAGGTCATCAGTTCGTGACTCGTAAAATCACGAAAGCGGTTGCGAATA 44218 || | || ||||||| || || ||| | || ||||| ||||| || Sbjct 441 --TCACCACGTAGAGGTCCAACCTTTGTAACTAGAAAGATCACTCGTTTCGTTGCTGGTA 498 Query 44219 TTTTCAACGGGACAGAAAAATGCATGTATCTAGGAAACATAGACTCTAAAAGAGATTGGG 44278 || || | ||| || | | || | || || || || ||||| | ||||||| Sbjct 499 TTGCATGTGGTAAAGATGAAATCCTCTACTTGGGTAATATTAACGCTAAACGTGATTGGG 558 Query 44279 GATATGCCTTGGATTATGTAGAAGCCATGTGGCTGATGTTGCAACAAGACAGGTCAGACG 44338 | | ||| || || || ||||| |||||| | ||||| |||||||| | |||| | Sbjct 559 GTCACGCCAGAGACTACGTCGAAGCAATGTGGTTAATGTTACAACAAGAGAAACCAGAAG 618 Query 44339 ACTACGTTATTGCAACTGG 44357 | | |||||| || ||||| Sbjct 619 ATTTCGTTATCGCCACTGG 637 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046715435094888