Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20citrinum_20[genbank_20GCA_5F000286055.1_202012-11- 01] 1,772 sequences; 26,251,846 total letters Query= NC_033423.1 Length=208501 Score E Sequences producing significant alignments: (Bits) Value seq2 105 9e-18 seq34 84.2 3e-11 >seq2 Length=130934 Score = 105 bits (116), Expect = 9e-18 Identities = 112/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 63746 TACCAGAAATAGGTGATAAATTTGCTTCTTTTACAGCTCAAAAAGGTACGTGTGGTATGA 63805 ||||| |||| |||||||| || ||||| | | |||||||||||| ||||||||| Sbjct 30440 TACCACAAATTGGTGATAAGTTCTCTTCTCGTCATGGTCAAAAAGGTACTTGTGGTATGG 30381 Query 63806 TTTATCGACAAGAAGATATGCCTTTTACCAAAGACGGTATCGTACCCGATCTCGTCATCA 63865 |||||| ||||||||| | || || || || |||||||| || ||| || | | | Sbjct 30380 CTTATCGTCAAGAAGATTTACCATTCACAGTTGAAGGTATCGTTCCAGATATCATTGTAA 30321 Query 63866 ATCCACACGCTTTTCCCAGTCGTATGAC 63893 ||||||| ||| |||| ||||||||| Sbjct 30320 ATCCACATGCTATTCCATCTCGTATGAC 30293 >seq34 Length=55608 Score = 84.2 bits (92), Expect = 3e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 155851 TCATTTTAGCAACGTGCACCTTTAAAATTTGAAGACGCCCCTTTTCATCGGGTAATCCAA 155910 ||||||| || || | ||| || ||||| | || | |||||| || ||| || Sbjct 11726 TCATTTTTGCTGTATGAATCTTAAAGATTTGTTCTCTACCATGTTCATCTGGCAATGAAA 11785 Query 155911 TTTCTATCTTCAATTCCAACCGCCCAGGTCTTAATAATGCTTCGTCAATTAAGTCGGGTC 155970 | || | | | ||||| || || || | | ||| ||||| || || | || || Sbjct 11786 TCTCGACGTGTACCTCCAAACGACCTGGACGAAGTAAAGCTTCATCGATCATATCCTTTC 11845 Query 155971 TGTTGGTCATACCTATGATTAAAATGTTGTTTAAAGATTCTACACCGTCTATTTTAGACA 156030 | ||||||||||| |||| ||||||||| || |||||||| ||||| || || | | || Sbjct 11846 TATTGGTCATACCAATGACTAAAATGTTATTCAAAGATTCGACACCATCGATCATTGCCA 11905 Query 156031 ATAATTGATTGACTAC 156046 | |||||||| || || Sbjct 11906 ACAATTGATTTACCAC 11921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 667060424284320