Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq232 136 4e-27 >seq232 Length=384298 Score = 136 bits (150), Expect = 4e-27 Identities = 553/861 (64%), Gaps = 24/861 (3%) Strand=Plus/Minus Query 16674 TTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCT 16733 |||| || || ||| |||||||| || || |||||||| |||| || || || | | Sbjct 339489 TTTGATACTCTGCAACACGTTTTTCAAAGAAATTAGTTTTTCCCTGAAGTGAAATCATAT 339430 Query 16734 CCATGAAATCAAAAGGATTAGTAGCT--GAAAATATTTT-AGAGTACCCCAGTTCGGCGA 16790 |||||||||| || ||||| | | | | ||| | | | || |||| ||| | | Sbjct 339429 CCATGAAATCGAATGGATTTGCTGATCCGTAAACACGCTCACAG---CCCAATTCTACTA 339373 Query 16791 TTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAA 16850 ||||||||| || || || |||| ||| || ||| | | |||||| || || | Sbjct 339372 ATAATCTATCGGCAACGAACTCTAAATACTGTGTCATAAGACCAGCGTTCATACCAATTA 339313 Query 16851 GACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAA 16910 || ||||||||||| ||| || | |||| || || ||| | | || || ||||| Sbjct 339312 AACTTACCGGAAGAGATTCTGTGATAAATTGTCTTTCGATATCTAAAGCATCGACAATAA 339253 Query 16911 TACTAGCAACTCGTTCCTCGG--ACGGTGTATGTTTAA-GATGTTTAAACATCAGACATG 16967 | || || || | | || ||| | || | || || || || | Sbjct 339252 TTTCTTTAATTCTATCTTTTGGCACTTTGTTTACCAAATGGTGATTGTGCAGGTGAACCG 339193 Query 16968 CGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGG 17027 | ||||| ||||||| || ||||| | || | ||| ||||| ||||| || || | Sbjct 339192 CAAAATCACAATGTACACCTTCGTCACGAGAAATCAATTCATTAGAGAATGTTAAACCTG 339133 Query 17028 GCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATAC 17087 |||| || ||||| || |||||| | || | ||| | || || || || || | Sbjct 339132 GCATTAAACCACGTTTTTTCAACCAATAAATTGAACAGAAAGCTCCCGAGAAAAAGATTC 339073 Query 17088 CCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCC 17147 | || || | ||||| || |||| || ||| || | | | || | |||| Sbjct 339072 CTTCAACTGCAGCAAAAGCAATTAGTCTTTCAGCAAATGAATCAGATTCG------ATCC 339019 Query 17148 ATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATA 17207 |||| |||| || ||||||| ||| || | | ||||| || ||||| | Sbjct 339018 ATTTTAAAGCCCATTCTGCTTTTTTCTTAATTGCAGGAAAAACTTCTAAAGCATTAAACA 338959 Query 17208 ATTTCTCTTTTTCCTG-TAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCG 17266 | | || |||| ||| | ||| ||| ||||||||| || | || || | || Sbjct 338958 ACT-CTGATTTTTCTGCTTCGTCTTTTACATACGTATCAATTAATAAAGAATAAGTCTCA 338900 Query 17267 GAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGA 17326 ||| || |||||||| ||||| || || |||||| | ||||| || |||| Sbjct 338899 CTGTGAATATTCTCCATCATGATCTGGAAACCATAAAAGAACTTTGCTTCGGCGTATTGA 338840 Query 17327 ACTTCC--ACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGA 17384 || || | | | || || || ||||||||||| ||||| ||||| || || | Sbjct 338839 ACCTCGTTAACAAAATTC--TCAGCCAGATTTTCGTTTACGATTCCGTCTGAAGCAGCAA 338782 Query 17385 AAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAG---AACGCGCCAGT 17441 |||| || || ||||| ||||||||||| |||||| |||| | ||| | Sbjct 338781 AAAATGCTAAAATATGTTTAATGAAATAACGTTCGTCGTCATTAAGTTTATTATTCCAAT 338722 Query 17442 CCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTT 17501 | ||||||| | || ||| | |||||||| ||||| |||||||| | |||| Sbjct 338721 CTGTTAAATCCTGATGTAAATCGATTTCTTCGGCAGTCCAGAAACTAGCTTCCATTTTTT 338662 Query 17502 TATACATATTCCAAATATCAT 17522 ||||| | ||||||||||| Sbjct 338661 TATACCATTCCCAAATATCAT 338641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517459027559760