Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq2491 192 6e-44 seq232 188 7e-43 >seq2491 Length=10632 Score = 192 bits (212), Expect = 6e-44 Identities = 589/895 (66%), Gaps = 27/895 (3%) Strand=Plus/Minus Query 15884 TTATCTTGTTTAGAAG-CAACACCCA--TTCTTTGGTAATCACTAACGCGTTTTTCGAAG 15940 ||||||| |||| | |||||||| || |||| ||||||| || ||||| || ||| Sbjct 4893 TTATCTTCCGTAGAGGTCAACACCCCGCTTTTTTGATAATCACCCACACGTTTCTCAAAG 4834 Query 15941 AAGTTAGTTTTTCCCTCTAAAGATATATTTTCCATAAAATCAAAGGGATTAGTAGCTGAA 16000 || || ||||| || | | || || | |||||||||||||| ||||| || || | Sbjct 4833 AAATTGGTTTTGCCTTGCAGGGAGATCATCTCCATAAAATCAAACGGATTGGTGGCATGA 4774 Query 16001 AATATCTTAGAGTACCCCAGTTCCGTAACTAATCTATCTGCTACAAATTCTATATATTGA 16060 |||| || | || ||||||||| | |||| ||||| ||||| || ||||| || Sbjct 4773 TATATTTTGGTATAACCCAGTTCCTGCAGCCATCTGTCTGCAACAAACTCAATATACTGT 4714 Query 16061 CACATTAAGTCGCAATTAATTCCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGT 16120 |||| | | ||| || || || || ||||| | || | ||| | ||||| Sbjct 4713 GACATCAGTTTTGCATTCATCCCGATCAGGGCAACCGGCAAGGCATCTGTAATAAATTCC 4654 Query 16121 TGTTCTATCACAACCGCTTCTTTAATGATATCGGTGGCTCGTGTTTCAGACG--GTGTAT 16178 | ||| || | ||||| || || || || || || || | | | || ||| Sbjct 4653 TTTTCGATTTCTACCGCGTCGCGGATAAT-TCCATGAA-CGACTTCCTGGCTCAGTTTAT 4596 Query 16179 GGTTTAGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGA 16238 || || |||| | | || || || || || ||||| | || || |||||| | Sbjct 4595 TTTTGAGCATTTTATAAAGCAGGCAGGCAAATTCACAATGCATCCCCTCATCTCTGGAAA 4536 Query 16239 TAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCG 16298 | | || || ||| |||| ||||||||| |||| ||| || |||||||| |||| Sbjct 4535 TCAACTCATTACTAAAGGTTAGCCCTGGCATCAGGCCTCTTTTTTTCAACCAGAAGATCG 4476 Query 16299 CAGCAAATGACCCCGAA-AAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCC 16357 | || | | |||| ||||| || || || || | || ||||| | || ||||| Sbjct 4475 AA-CAGAAGCTCCCGCTGAAGAAAATGCCTTCCACTGCGGCGAAAGCCACCAAACGTTCG 4417 Query 16358 GCGTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATA 16417 || | | | | | | ||||| | | ||||||| ||||||| |||| | Sbjct 4416 GCAAAATTTCCGCCCTCA------ATCCAGCGCAATGCCCATTCTGCTTTTTTCTTTACA 4363 Query 16418 CAATCCATCGTTTCTATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATAC 16477 ||| | ||| |||| ||| | |||| | |||||||| | | ||| | ||||| Sbjct 4362 CAAGGAACCGTCTCTACGGCATGGAACAGCCTGTCTTTTTCTTCAGGATCTTTAATATAG 4303 Query 16478 GTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCA 16537 ||||| ||||| | || |||| ||||| ||||| || || ||||| || ||| Sbjct 4302 GTATCGATCAGCAGCGCATAGGTTTCAGAGTGGATGTTTTCCATCATGATCTGGAAGCCA 4243 Query 16538 TAGAAGCATCGAGCCTCCGCTATTTGTACTTC-CACGTAAAATCGTTCC--GCCAGGTTC 16594 || || || || || || | | |||||||| | | | || |||| || ||||| Sbjct 4242 TAAAAACAACGGGCTTCGGGAAGCTGTACTTCGCTCATGAA---GTTCACTGCAAGGTTT 4186 Query 16595 TCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTT 16654 ||||| || || |||||||||||||||||||| || | ||| || |||||||| Sbjct 4185 TCATTTACAATGCCGTCACTTGCAGCAAAAAAAGCAAGTATATGAGAAATGAAATGACGC 4126 Query 16655 TCGTCAG-ATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGG 16713 ||| | | || |||| | | ||| | || || | || | || | |||||| | Sbjct 4125 TCGCCTGTATTTAAG-TTGTCCCAGTGCTTCTGGTCATCAGAAAGGTCAATTTCTTCAGC 4067 Query 16714 CGTCCAAAAGCTAGC--CACTGCCTTTTTATACATTTTCCAAATATCATTGTATT 16766 ||||| || || || |||| ||| |||||||||| ||| || ||| ||||| Sbjct 4066 GGTCCAGAAACTTGCTTCACT--CTTCTTATACATTTCCCAGATTTCAGGGTATT 4014 >seq232 Length=384298 Score = 188 bits (208), Expect = 7e-43 Identities = 587/892 (66%), Gaps = 54/892 (6%) Strand=Plus/Minus Query 15912 TTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTT 15971 |||| || || ||| |||||||| ||||| ||||||||||||| | || || | | Sbjct 339489 TTTGATACTCTGCAACACGTTTTTCAAAGAAATTAGTTTTTCCCTGAAGTGAAATCATAT 339430 Query 15972 CCATAAAATCAAAGGGATTAGTAGCT--GAAAATAT-CTTAGAGTACCCCAGTTCCGTAA 16028 |||| ||||| || ||||| | | | | ||| | || | || |||| ||| | Sbjct 339429 CCATGAAATCGAATGGATTTGCTGATCCGTAAACACGCTCACAG---CCCAATTCTACTA 339373 Query 16029 CTAATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAA--TTAATTCCTAT 16086 ||||||||| || || || |||| ||| || ||| ||| | || || || || || Sbjct 339372 ATAATCTATCGGCAACGAACTCTAAATACTGTGTCAT-AAGAC-CAGCGTTCATACCAAT 339315 Query 16087 AAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTC--TATC----------ACAAC 16134 | | ||||||||||| || ||| | ||||||| ||| |||| |||| Sbjct 339314 TAAACTTACCGGAAGAGATTCTGTGATAAATTGTCTTTCGATATCTAAAGCATCGACAAT 339255 Query 16135 CGCTTCTTTAATGATATCGGT-GGCTCGT-GTTT--CAGACGGTGTATGGTTTAGGTGTT 16190 ||||||||| |||| | ||| | | |||| || | |||| || || ||||| Sbjct 339254 AATTTCTTTAATTCTATCTTTTGGCACTTTGTTTACCAAATGGTG-ATTGTGCAGGTG-- 339198 Query 16191 TAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGG 16250 ||| ||| || || ||||||| |||||||| | || | ||| || | Sbjct 339197 --AAC--------CGCAAAATCACAATGTACACCTTCGTCACGAGAAATCAATTCATTAG 339148 Query 16251 AAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACC 16310 | || ||||| ||||||||| || ||||| || ||||| | || | | || | | Sbjct 339147 AGAATGTTAAACCTGGCATTAAACCACGTTTTTTCAACCAATAAATTGAACAGAAAGCTC 339088 Query 16311 CCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCAT 16370 |||| || || || || ||||| | |||||||| |||| || ||| || | | | || Sbjct 339087 CCGAGAAAAAGATTCCTTCAACTGCAGCAAAAGCAATTAGTCTTTCAGCAAATGAATCAG 339028 Query 16371 CTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTT 16430 || ||| ||||||| ||||||| ||||||| || || | | || Sbjct 339027 ATT-----CGA-TCCATTTTAAAGCCCATTCTGCTTTTTTCTTAATTGCAGGAAAAACTT 338974 Query 16431 CTATGGCCTTAAACAATTTCTCTTTTTCCTGAATA-TCGATTATATACGTATCAATCAGT 16489 ||| || |||||||| | || |||| ||| | || ||| |||||||||||| | | Sbjct 338973 CTAAAGCATTAAACAACT-CTGATTTTTCTGCTTCGTCTTTTACATACGTATCAATTAAT 338915 Query 16490 AAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGA 16549 ||| || | || ||| || ||||| || ||||| || ||||| ||| | Sbjct 338914 AAAGAATAAGTCTCACTGTGAATATTCTCCATCATGATCTGGAAACCATAAAAGAACTTT 338855 Query 16550 GCCTCCGCTATTTGTACTTCC--ACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATAC 16607 || || || ||| || || | ||| || || ||||| || || || ||||| | Sbjct 338854 GCTTCGGCGTATTGAACCTCGTTAACAAAATTC--TCAGCCAGATTTTCGTTTACGATTC 338797 Query 16608 CGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAA 16667 |||| ||||||||||| || || || || ||||||||||| |||||| ||| Sbjct 338796 CGTCTGAAGCAGCAAAAAATGCTAAAATATGTTTAATGAAATAACGTTCGTCGTCATTAA 338737 Query 16668 G---AATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGC 16724 | | ||| ||||||| ||||||| | || ||| | |||||| | ||||| || | Sbjct 338736 GTTTATTATTCCAATCTGTTAAATCCTGATGTAAATCGATTTCTTCGGCAGTCCAGAAAC 338677 Query 16725 TAGCCACTGCCTTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAA 16776 |||| | ||||||||| || ||||||||||| | || || ||||| Sbjct 338676 TAGCTTCCATTTTTTTATACCATTCCCAAATATCATGATGTTTGATAGGAAA 338625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511328853156240