Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_001317.1 Length=30624 Score E Sequences producing significant alignments: (Bits) Value seq12163 145 1e-30 seq3006 113 9e-21 seq3418 104 5e-18 seq9435 93.3 8e-15 seq1269 84.2 4e-12 >seq12163 Length=619 Score = 145 bits (160), Expect = 1e-30 Identities = 379/576 (66%), Gaps = 26/576 (5%) Strand=Plus/Plus Query 2373 GCAAAGTCCATGCCCTTCCACTGGTGGCGCTCCAGCATGCGGAACTTGCCACCAGAAACC 2432 || |||||||||||||| ||||||| |||||||||| ||||||||||||||| | || Sbjct 7 GCGAAGTCCATGCCCTTGAACTGGTGACGCTCCAGCACGCGGAACTTGCCACCGGGCACT 66 Query 2433 ACCGGCGGCGCGAGCACGACGCACCCGGCGCTGTCGCCAGTGTGTGACGGGTCGTAGCCA 2492 |||||||| | | ||| |||||||||||||| || | | ||||||||| ||| Sbjct 67 TGGGGCGGCGCCACAATCACGATGCCGGCGCTGTCGCCCGTCTCGGCCGGGTCGTACCCA 126 Query 2493 ATCCAGACGGGGCGAGAGCCGAACGGATGGTCGGCGAACGGGGCGAA---GTCCTCCCAT 2549 ||||| || | ||| ||| | || | |||||| ||| ||| | | |||| Sbjct 127 ATCCACACCGCGCGGTCGCCATATGGGCGCATGGCGAAGGGGCTGAACTCGCCGGCCCAC 186 Query 2550 TCTTCCATCACGTCGACCATGCAGCGCTGCAGC-TCCTCGAACGGGAATACCGACGCTTT 2608 || || ||| ||| ||| |||||||| || || | |||||| || || | Sbjct 187 TCCACCCAGCTGTCCACCTGGCACGGCTGCAGCATCGTC-AGCGGGAACACGCTGGCGCT 245 Query 2609 ATCGTCGACAAACTCGCACATAAACAGGTTTTTAAAGTCCTCATCACTGTTTTCGCGTTT 2668 ||||| || ||||||||||| | |||||| || ||||| | |||| Sbjct 246 GTCGTCCACGAACTCGCACATCAGCAGGTTGGCGAATTCCTCGGCGCTGT---------- 295 Query 2669 GAGTTGGTCGAGGTCGAACAGGGTGCAGCCACCGGCAAGGGCGTCCTCAATGGTGACAAT 2728 | | |||||||| ||| || | | | ||||| | ||||| || Sbjct 296 ------NNCCACATCGAACAGATCGCACCCTCGGTCGGCCGCGTCGAGCACTGTGACGAT 349 Query 2729 CTGCCGCCACTGGCCATCGTCGCAGAGCTGGCCACCGGCGAGCGCGCGGTGACTGATGTC 2788 ||||||||| | || |||||| | |||||| | | ||| || ||| |||| || Sbjct 350 CTGCCGCCAGATAGCGTCCTCGCAGCGTCGGCCACTGCCCAGCCGGCCGTGGCTGACATC 409 Query 2789 AATTTCGAT-GCGGTCGGCAATACGGCTGCGCCCCTTGTTGAACAGCTCGCCAGACCAGA 2847 | ||||| | | || | ||||| ||||||||||| ||||||| | ||||| Sbjct 410 GA--TCGATACCTGCTGGGAGGTCGGCT--TGCCCTTGTTGAAGCGCTCGCCTGTCCAGA 465 Query 2848 AGGGATAAGCGCCGTGCGCCAGCGTTGAGGGTGTCGAAAAGTAGGTTGAGCGCAGATGCT 2907 | || || ||||||||| || || || || |||||||| |||| | || Sbjct 466 AATCGTAGGCTTCGTGCGCCATGGTGGAAGGCGTGCTGAAGTAGGTCTTGCGCCATTTCT 525 Query 2908 TCTGCGAGGCCATGCCCGAGGCGACTTTGCGCAGCT 2943 | ||| |||||||| |||||| ||| ||||| Sbjct 526 TGTGCATCGCCATGCCGCTGGCGACCTTGTTCAGCT 561 >seq3006 Length=629 Score = 113 bits (124), Expect = 9e-21 Identities = 176/249 (71%), Gaps = 2/249 (1%) Strand=Plus/Plus Query 14840 GGCTGGCACAAAACGCTGTCTAACGTTGGCGTGCAGGGCGTTACCGGCATCAGCGCCTCA 14899 |||||||| || ||||||| ||||| | ||| ||||| |||||||||||| Sbjct 21 GGCTGGCATAAGTCGCTGTCCAACGTGGCCGTAGCCGGCGTGACCGGCATCAGCCGGGAC 80 Query 14900 GTCTTTTGGGATTTGCAGGCATCCGGC-ACAGATGCTGACCTGCTCAACGAGGCCGGAGT 14958 ||| |||||| |||||| ||||||| || || || | | ||||||| | |||| | Sbjct 81 GTCCATTGGGACCTGCAGG-ATCCGGCGACCGACGCCGGCATGCTCAATGCCGCCGATAT 139 Query 14959 CACCACGCTGGTGCGCAAGGATGGTTTCCGTTTTTGGGGGAACCGCACATGCTCTGATGA 15018 |||||||||| | | | || | | || ||||| ||||| ||| ||||| Sbjct 140 CACCACGCTGATCAACTCCAACGGGTACAAGTTCTGGGGATCGCGCACCTGCAGCGATGA 199 Query 15019 CCCGCTTTTCCTGTTTGAGAACTACACCCGAACCGCGCAGGTGCTGGCCGACACAATGGC 15078 ||||| || || |||| || |||||| || |||||| | ||||||||||| || || Sbjct 200 GCCGCTGTTTGCCTTCGAGACCTCCACCCGCACGGCGCAGATCCTGGCCGACACCATCGC 259 Query 15079 TGAGGCGCA 15087 |||||||| Sbjct 260 CGAGGCGCA 268 >seq3418 Length=506 Score = 104 bits (114), Expect = 5e-18 Identities = 280/415 (67%), Gaps = 20/415 (5%) Strand=Plus/Minus Query 368 AGCTGGAACGGTACGCGGTGCGCGTCCATCAGGTCGGCGGCGC-TGGCTTTCTTGATGTT 426 ||||| ||| ||||| |||| ||| || |||| || ||| | | ||||||||| Sbjct 481 AGCTGCGGCGGCACGCGCAGCGCCGCCAGCATGTCGTCG-CGCGTCACGCCCTTGATGTT 423 Query 427 GAAAAAGTCATCCTTTGTGGCGACCTCGCTCAGTGGCACGATTTTAATGCCGTCCGGTTT 486 | || |||||||| | || |||||||||| || | ||| | | ||||| || Sbjct 422 GGCGAACTCATCCTTGGCCGCCACCTCGCTCACCGGGATGATCTGCAGACCGTCTTTCTT 363 Query 487 TCCATTGGGAGCGTAGAAAAACAGGTTTTTAAAATTGCCGAGCCC---TTTCGAGTTGCG 543 || ||||| | | | |||||||| || ||||| | || | || ||| | Sbjct 362 GCCGTTGGGCGAATGCACGAACAGGTTCCGGAAGTTGCCCGGACCACGTGCCGCCTTGAG 303 Query 544 CATCGCCTCGCGCAG--CGATTCGACGTCGGTCGCGCTCTGCGCCGGG--TCGGTCACAT 599 | ||||||||||| || || ||||||| || || || | ||| ||||||| | Sbjct 302 C---GCCTCGCGCAGGCCGGTT--ACGTCGGACGAT-TCCGC-CTGGGAATCGGTCAGGT 250 Query 600 ACATGATGTAACCCGCATGCGCGCCGTTCTGGTAATACTTGCGGCGGAACAGCGTTGCGG 659 | | |||| | || || |||| |||||| | ||| |||||||| ||||||||||| || | Sbjct 249 AGAGGATGAAGCCGGCGTGCGAGCCGTTGTTGTAGTACTTGCGCCGGAACAGCGTGGCCG 190 Query 660 ATTCATTCAGCCAGGCGGAATTAAGCGCGCTGAGAT--ATTCGGGCAGGCCGTAAATCTC 717 | || || ||| |||| | | || || | || | |||||||||||||| | ||| Sbjct 189 ACTCGTTGAGCAGCGCGGCCTGCA-CG-GCCGGCATCCACTCGGGCAGGCCGTACACCTC 132 Query 718 CTGATTAATGTCGGGCTCCAGCAGGTGAAACACGGTATCAGGCGCGAATTCATGC 772 ||| | |||| |||| |||| || |||| | | || |||||||||| Sbjct 131 CTGGTCTGCATCGGACTCCCGCAGCTGGTACACCTGCCCGGCCGGGAATTCATGC 77 >seq9435 Length=520 Score = 93.3 bits (102), Expect = 8e-15 Identities = 275/412 (67%), Gaps = 14/412 (3%) Strand=Plus/Plus Query 5441 GACTATGAGAACCTCGACGCACTGGTGATGGATG--GTACCAATACCCTGATTGACGAGA 5498 ||||| | ||||| ||||| ||||| ||||||| || | | ||||||| || | Sbjct 86 GACTACGCCAACCTGGACGCGCTGGTTATGGATGTGGTGTCCA--CCCTGATCGAGCCGT 143 Query 5499 TTTATCAGGATGACCCGAAACTCGTTGCCATCGTTGGCCGTAAGCTGCTGGCCGACAAAT 5558 | ||| | || ||| | || | |||| | ||||| || ||| || |||||| | Sbjct 144 GGCACCAGCAGGATCCGGGCTTGGTGGTCATCCTGGGCCGCAACCTGGTGCACGACAAGT 203 Query 5559 ATTTTCCGCTGGTCAACAAACAGCAGGAAAACACCGAGTCGCTCGCGGCGGATATCATCA 5618 | || || | ||||||| | | || |||||| ||| || |||||| | | Sbjct 204 ACTTCCCCATCATCAACAAGGACCTGGCGCCGACCGAGCAGCTGGCCGCGGATCTGGTGC 263 Query 5619 TCAGCCAGAAGCGCATCGGCAACCTGCCAGCC-GTACGTGTGCCGTACTTCCCGGCGAAC 5677 | || ||||||||||| |||| ||||| || ||||| | | ||||||| ||| Sbjct 264 TGGGCACTAAGCGCATCGGTGGCCTG-CAGCCGGTGATCGTGCCTTTCGTCCCGGCCAAC 322 Query 5678 GCGGTGTTCGTGACCACGCTGGAAAACCTCTCTATCTA-TTTCATGGAT-GAGAGCCACC 5735 || || | || ||| ||||||| || || || ||||| | || ||| || ||| || Sbjct 323 GCCCTGATGGTCACCTCGCTGGACAATCTGTCGATCTACTGGCA--GATCGACGGCCGCC 380 Query 5736 GCCGCAGCATTGATGAAAACCCGAAAAAAGACCGCGTGGAAAACTACGAGTCGATGAACA 5795 |||| | | || | ||| | || ||||||||| |||| ||||||| ||| Sbjct 381 GCCGTTACCTCATCGAGCAGCCGCAGAAGAACCGCGTGGCGAACTTCGAGTCGTCCAACG 440 Query 5796 TCGACTATGTGGTCGAGGCGTATGCCGCCG-GGTG-CCTGCTGGAAAACATC 5845 |||||| |||||||| | || | |||| || | |||| | || |||||| Sbjct 441 ACGACTACGTGGTCGAAGACTA--CGGCCGTGGCGCCCTGGTCGAGAACATC 490 >seq1269 Length=1066 Score = 84.2 bits (92), Expect = 4e-12 Identities = 166/238 (70%), Gaps = 6/238 (3%) Strand=Plus/Plus Query 3380 GTTGCGGTTGGCGACGTTGGGGTTAAGGTCGGCCTCGTTGCCGGTCTGGCT-GTAGCGGT 3438 ||||||||||||||| ||||| ||||| ||||||||||| | | || ||| || | Sbjct 16 GTTGCGGTTGGCGACCGCTGGGTTCAGGTCCGCCTCGTTGCC-GCCGCCCTGGTAACGCT 74 Query 3439 TAACGCGTGCCAGTCGTTCAATCTGCCGCCCGAGCAGGTCAATCTCTTTGAAGTCACCGC 3498 | ||| ||| | || || | |||||| |||||||| |||||||||||||| |||| Sbjct 75 GGATGCGGGCCTGCCGCTCCAGCTGCCGATGCAGCAGGTCGATCTCTTTGAAGTCGCCGC 134 Query 3499 CTGACTTTTGCGGCTTGGCGATGAGCTGAATCAGGCGCGCCT-CAAGGCTGCTTTCAACG 3557 | | ||| |||| ||| || || ||||||| |||||| || |||| Sbjct 135 CGGTCTTACCTTCCTTGTGGATCAGGATGGCCAACCGCGCCTCCAAGGC-GCCGCCAACA 193 Query 3558 CGGGAAATCGGT-GCGATGCCATCCCAGCCGTCGCGCTGTTTCCAGCTCTGCACGGTC 3614 || | |||| || || ||||| |||||||| |||||||| || |||||| Sbjct 194 CGCTCCA-CGGTATCGGCGCGGTCCCATTCGTCGCGCGCCTTCCAGCTGTGGACGGTC 250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97859646529624