Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq5955 168 8e-37 seq1087 158 1e-33 seq5294 140 4e-28 >seq5955 Length=632 Score = 168 bits (186), Expect = 8e-37 Identities = 240/332 (72%), Gaps = 8/332 (2%) Strand=Plus/Plus Query 145690 TCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTG--GATGAAGTCCCCGGGCT 145747 || ||||| ||| ||||||||| ||| || | ||| || |||||| ||||||| Sbjct 184 TCGACGTGATTGTCGTAGACGTGGCAGTCTCC--GCCCGTCCAGACGAAGTCTCCGGGCT 241 Query 145748 CGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGG 145807 |||||||| | ||||||| ||| |||||||| || |||| ||| |||||||| | Sbjct 242 CGAGGCCCACCTGCTGGGCGATCATCATGGTCAGCAAGGCGTAGGAGGCGATGTTGAACG 301 Query 145808 GCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCG 145867 |||| || || |||||| | |||||| |||||||| || ||||||| ||| | | Sbjct 302 GCACACCGAGGAACATGTCGGCGCTGCGCTGATACAGCTGACACGAGAGCTTGCCGTCGG 361 Query 145868 CCACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCG 145927 | |||||||||||| |||| ||| ||||||| || |||||| | || | ||| |||| Sbjct 362 CGACGTAGAACTGGAACAGCGCGTGACAGGGCGCGAGCGCCATGTCCGGGATGTCGGCCG 421 Query 145928 GGTTCCAGGCGGTGAGGACGAGCCTCCTGCTCTCGGG-GTTCCTCTTGATCTCCCCTATC 145986 |||||||||| | | || ||||| | | ||||| | | || ||||| | | ||| Sbjct 422 GGTTCCAGGCAGACACGATGAGCCGACGGGAGTCGGGCGAGCGTC-GGATCTGCTCGATC 480 Query 145987 AGGTCCCTGAGCTGGTCCACGCCCTGCCCCCG 146018 | ||| ||||||||| | | || |||||| Sbjct 481 ACGTCGGAGAGCTGGTCGATG--CTCCCCCCG 510 >seq1087 Length=202632 Score = 158 bits (174), Expect = 1e-33 Identities = 186/252 (74%), Gaps = 0/252 (0%) Strand=Plus/Plus Query 145688 GCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCGGGCT 145747 |||| | |||||| |||| ||||| || ||||| ||| | ||| || || |||| Sbjct 83315 GCTCGAAATGGTTGGCATAGAGATGCGCATCGCCCAGCGTGTGAACGAAATCACCCGGCT 83374 Query 145748 CGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGG 145807 || ||||||| || || |||||| ||||||||||| ||| || || ||||| | Sbjct 83375 GCAGACCCGTGACCTGCGCCACCATGAGGGTCAGCAGGGCATAGGATGCGATATTGAACG 83434 Query 145808 GCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCG 145867 |||| || || || || | ||||||||||| ||||||||||| |||| ||| | | Sbjct 83435 GCACGCCGAGAAAGATATCGGCGGAGCGCTGGTAGAGCTGGCAGGAAAGCTTTCCGTCGG 83494 Query 145868 CCACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCG 145927 |||||||||||||| ||||| ||||||||||||||| ||||| | | | ||||| Sbjct 83495 CCACGTAGAACTGGAACAGGCAGTGGCAGGGCGGCAGCGCCATTTCATCGACGAGCGCCG 83554 Query 145928 GGTTCCAGGCGG 145939 | ||||| |||| Sbjct 83555 GATTCCATGCGG 83566 >seq5294 Length=478 Score = 140 bits (154), Expect = 4e-28 Identities = 152/199 (76%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 145690 TCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTC-CCCGGGCTC 145748 || ||||||||| ||| | |||||||| |||||| || | |||||| ||| || | Sbjct 415 TCAACGTGGTTGGAGTACAGATGCGCGTCGCCCAGGGTATGCACGAAGTCGCCCACGCCC 356 Query 145749 GAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGG 145808 || || ||| || || ||||||| ||| ||||| | ||||||||| |||||||| || Sbjct 355 -AGCCCGGTGGCCTGCGCCACCATGTGGGTGAGCAGTGCGTAGCTGGCGATGTTGAACGG 297 Query 145809 CACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGC 145868 ||| ||||| ||||| || ||||||||||| ||||||| ||||| ||| || | Sbjct 296 CACGCCCAGGAAGATGTCGCCGCTGCGCTGGTACAACTGGCAGCTGAGCTTGCCGTCCAC 237 Query 145869 CACGTAGAACTGGCACAGG 145887 ||||||||||||| ||||| Sbjct 236 CACGTAGAACTGGAACAGG 218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589978094903280