Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq915 141 1e-28 seq444 123 3e-23 seq1158 116 4e-21 seq60 113 5e-20 seq974 102 8e-17 >seq915 Length=13476 Score = 141 bits (156), Expect = 1e-28 Identities = 183/252 (73%), Gaps = 3/252 (1%) Strand=Plus/Plus Query 116944 TTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCG 117003 ||| || || ||||||||||| || || || || || ||||||| |||||||| || | Sbjct 44 TTTATTTAATGCCATCGAGACCATTCCATGTGTAAAGAAGAAGGCTGAGTGGGCTATGAG 103 Query 117004 CTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGA 117063 ||||| || | || | || | ||||| |||| ||||| || || || || Sbjct 104 ATGGATTACCAACTCCAAGTCA---TTTGCTGAGCGTTTGGTCGCCTTTGCAGCTGTAGA 160 Query 117064 GGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCAT 117123 ||| |||| || || || ||| | |||| |||||||||||||| || ||| | || Sbjct 161 GGGTATCTTTTTCAGTGGTAGCTTCTGCTCCATCTTTTGGCTCAAGAAGCGTGGCTTGAT 220 Query 117124 GCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTT 117183 |||||| |||| ||| |||||||||||| | ||||||||||| || || ||||| Sbjct 221 GCCCGGATTGACATTCTCTAACGAGCTCATCAGTCGTGACGAGGGTCTTCACTGTGACTT 280 Query 117184 TGCCTGTTTGCT 117195 |||||||||||| Sbjct 281 TGCCTGTTTGCT 292 >seq444 Length=38654 Score = 123 bits (136), Expect = 3e-23 Identities = 155/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||| || || ||||||||| | || ||||||| || Sbjct 5273 ATGCAAATCTTCGTCAAGACCCTCACTGGTAAGACCATCACCCTTGAGGTCGAAGGTTCC 5332 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | |||| ||||| || || | ||||| ||||| ||||| | ||||| Sbjct 5333 GATACTATCGAGAACG-TCAAGACCAAGATCCAAGACAAGGAGGGTATCCCACCTGACCA 5391 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||| ||||||| || ||||| || || || || | || || ||| ||| ||||| Sbjct 5392 ACAACGTCTCATCTTTGCCGGCAAGCAACTTGAGGATGGTCGTACTCTCTCCGATTACAA 5451 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||| |||||| |||| || ||||| || Sbjct 5452 CATCCAAAAGGAGTCCACCCTCCATCTCGT 5481 Score = 111 bits (122), Expect = 2e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||| || || |||||||| | || ||||| | | Sbjct 5045 ATGCAAATCTTCGTTAAGACCCTCACTGGTAAGACCATCACTCTTGAGGTCGAGGGTTCT 5104 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||||| || || | ||||| || || ||||| | ||||| Sbjct 5105 GACACCATTGAGAATGTCAAGACCAAGATCCAAGACAAGGAAGGTATCCCACCTGACCAA 5164 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| ||||||| ||| || || ||||| || || | || || || ||||||||| Sbjct 5165 CAACGTCTCATCTTCGCTGGTAAGCAGCTCGAGGATGGTCGTACTCTTTCTGACTACAAC 5224 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||| |||||| |||| || ||||| || Sbjct 5225 ATCCAAAAGGAGTCCACTCTCCATCTCGT 5253 Score = 105 bits (116), Expect = 7e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || | || || || |||||||| |||| ||||| | | Sbjct 5501 ATGCAAATCTTCGTCAAGACCTTGACTGGTAAGACCATCACTCTCGAGGTCGAGGGTTCT 5560 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||||| || |||| ||||| ||||| ||||| | ||||| Sbjct 5561 GACACCATTGAGAATGTCAAGACCAAGATTCAAGACAAGGAGGGTATCCCACCTGACCAA 5620 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| ||||||| || || || || || || || | || ||||| ||||||||| Sbjct 5621 CAACGTCTCATCTTTGCTGGTAAGCAACTTGAGGATGGTCGTACCCTTTCTGACTACAAC 5680 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 ||||| |||||| |||| || || Sbjct 5681 ATCCAAAAGGAGTCCACTCTTCA 5703 Score = 102 bits (112), Expect = 8e-17 Identities = 149/208 (72%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 || ||||||||| || || ||||| || || ||||| || || ||| | || ||||| | Sbjct 4813 AACAATGCAAATCTTTGTTAAAACTCTGACAGGCAAGACTATTACCTTGGAGGTCGAGGG 4872 Query 40746 CACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 |||| | | | |||| ||||| || || | ||||| ||||| || || | | Sbjct 4873 TTCCGATACTATCGAGAACG-TCAAGACCAAGATCCAAGACAAGGAGGGAATTCCACCTG 4931 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 |||| ||||| ||||||| || ||||| || || || || | || || ||| ||| | Sbjct 4932 ACCAACAACGTCTCATCTTTGCCGGCAAGCAACTTGAGGATGGTCGTACTCTCTCCGATT 4991 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCA 40892 |||||||||| |||||| |||| || || Sbjct 4992 ACAACATCCAAAAGGAGTCCACTCTTCA 5019 >seq1158 Length=25781 Score = 116 bits (128), Expect = 4e-21 Identities = 152/208 (73%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| |||||||| || ||||| || || || ||||| ||||||||| | || || || | Sbjct 9939 AAACATGCAAATCTTTGTAAAGACACTGACTGGCAAGACCATCACCTTGGAGGTTGAGGG 9880 Query 40746 CACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 |||| | | | | |||| ||||| || || | || || ||||| ||||| | | Sbjct 9879 TTCCGATACCATCGAGAACG-TCAAGACCAAGATCCAAGATAAGGAGGGTATCCCACCTG 9821 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 |||| ||||| ||||||| || || || || || || || | |||||||| ||||| Sbjct 9820 ACCAACAACGTCTCATCTTTGCTGGTAAGCAACTTGAGGATGGTCGCACCCTTTCCGACT 9761 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCA 40892 |||||||||| |||||| |||| || || Sbjct 9760 ACAACATCCAAAAGGAGTCCACTCTCCA 9733 Score = 105 bits (116), Expect = 7e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || | || || || ||||||||| | || || || | | Sbjct 9251 ATGCAAATCTTTGTCAAGACCTTGACTGGTAAGACCATCACCCTTGAGGTTGAGGGTTCT 9192 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| ||||| || |||| ||||| ||||| ||||| | || || Sbjct 9191 GATACCATCGAGAACG-TCAAGACCAAGATTCAAGACAAGGAGGGTATCCCACCCGATCA 9133 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||| ||||||| || || || || || || |||| || ||||| ||||||||| Sbjct 9132 ACAACGTCTCATCTTTGCTGGTAAGCAACTTGAGGACGGTCGTACCCTTTCCGACTACAA 9073 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||| |||||| |||| || ||||| || Sbjct 9072 CATCCAAAAGGAGTCCACTCTCCATCTCGT 9043 >seq60 Length=27343 Score = 113 bits (124), Expect = 5e-20 Identities = 149/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || || || |||||||| |||| ||||| | | | Sbjct 11741 ATGCAGATCTTCGTTAAGACATTGACAGGAAAGACCATCACACTCGAGGTCGAGGGCTCT 11682 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | ||||| ||||| |||||| | ||||| Sbjct 11681 GACACCATCGAGAACG-TCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCCCCCGACCA 11623 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||| || |||| ||| || || || || || || | |||||||| |||||||| Sbjct 11622 ACAACGTCTTATCTTCGCCGGTAAGCAACTTGAGGATGGTCGCACCCTTTCGGACTACAA 11563 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 |||||| |||||| | || || || Sbjct 11562 CATCCAAAAGGAGTCAACCCTCCA 11539 >seq974 Length=18895 Score = 102 bits (112), Expect = 8e-17 Identities = 134/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 40713 CACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGA 40772 ||| || || ||||| ||| | || ||||| | | | |||| | | | | |||||| Sbjct 5040 CACAGGTAAGACCATTACCCTTGAGGTCGAGGGCTCAGACACCATCGAGAATGTCAAGGC 4981 Query 40773 AAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAA 40832 || || | ||||| ||||| |||||| | || || ||||| | |||| ||| || || Sbjct 4980 CAAGATCCAAGACAAGGAGGGAATCCCCCCCGATCAACAACGTTTGATCTTCGCTGGTAA 4921 Query 40833 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 ||| |||| |||| || |||||| ||||||||||||||||||||| | || || || Sbjct 4920 GCAGTTGGAGGACGGTCGTACCCTCTCTGACTACAACATCCAGAAGGAGTCAACTCTCCA 4861 Query 40893 TCTAGT 40898 || || Sbjct 4860 CCTCGT 4855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515133016708320