Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_002166.1 Length=40751 Score E Sequences producing significant alignments: (Bits) Value seq2342 1180 0.0 seq3538 351 3e-92 seq3951 179 1e-40 >seq2342 Length=4104 Score = 1180 bits (1308), Expect = 0.0 Identities = 1229/1602 (77%), Gaps = 14/1602 (1%) Strand=Plus/Plus Query 20448 TTGACAAAAAATTAGCGCAAGAAGACAAAAA--TCACCTTGCGCTAATGCTCTGTCTCAG 20505 ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| Sbjct 217 TTGACAAAAAATTAGCGCAAGAAGACAAAAAAATCACCTTGCGCTAATGCTCTGTTACAG 276 Query 20506 GTCACTAATACTATCTAAGTAGTTGATTCATAGTGACTGGATATGTTGCGTTTTGTCGCA 20565 ||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||| ||| Sbjct 277 GTCACTAATACCATCTAAGTGGTTGATTCATAGTGACTGGATATGTTGTGTTTTGTAGCA 336 Query 20566 TTATGTAGTCTATCATTTAACCACAGATT--AGTGTAATGCGATGATTTTTAA-GTGATT 20622 ||||| ||||||| |||| || || | | | ||| || |||| || | || || Sbjct 337 TTATGCAGTCTATTTTTTAG--ACTGAATCAATTATAAGCCGTTGATATTAATTGTTTTT 394 Query 20623 AATGTTATTTTGTCATCCTTTAGGTGAATAAGTTGTATATTTAAAATCTCTTTAATTATC 20682 | ||| ||| | ||| | | ||||||| | ||||| | || ||||| Sbjct 395 ACCGTTTCACATTCAACTTTTTTAT-ACTAAGTTGGCATTATAAAAAAGCATTGCTTATC 453 Query 20683 AGTAAATT--AATGTAAGTAGGTCATTATTAGTCAAAATAAAATCATTTGTCGATTTCAA 20740 | | || || | | |||||| ||| |||||||||||||||||| | |||||||| Sbjct 454 AATTTGTTGCAACGAAC--AGGTCACTATCAGTCAAAATAAAATCATTATTTGATTTCAA 511 Query 20741 TTTTGTCCCATTCCCGTCCACGGCTGTCCCTATACCGCGCCGCCATTGAATCTGATTTAT 20800 |||||||||| |||| || | | || | |||| | | ||||| | || || |||| Sbjct 512 TTTTGTCCCACTCCCTGCCTCTGTCATCACGATACTGTGATGCCATGGTGTCCGACTTAT 571 Query 20801 GCCCGAGAAGACGTTGAGCAAACTTATCGCCAATCTGGTTCCGGTATAGCCTCGCTGACA 20860 ||||||||||| |||||||||| ||||||| ||||| ||| || || || || |||| Sbjct 572 GCCCGAGAAGATGTTGAGCAAATTTATCGCTTATCTGCTTCTCATAGAGTCTTGCAGACA 631 Query 20861 GGCTACGCAGTTCATGGAATGTTGGCGGGTTTCCATCAAATGAGAGTCCAGATGCATTTC 20920 || |||| || || || |||||||| | || || || ||||| || ||||| |||| Sbjct 632 AACTGCGCAACTCGTGAAAGGTTGGCGGATCCCCTTCGAAGGAGAGACCTGATGCTTTTC 691 Query 20921 TCGCCTTTGTAAAATACTTTGATACTGTTTTCGGGGAAAGCGGATCGTGATGCTTTGATG 20980 || |||||||| |||||||||| | |||||||| || || | | |||| Sbjct 692 GTGCGCGCATAAAATACCTTGATACTGTGCCGGATGAAAGCGGTTCACGACGAGTAGATG 751 Query 20981 CGATTATAGTTTCACTGCTGCTGGCCTCCCTGCATTGCTGTAGTGTATCAGCCAATGAGA 21040 | ||||| ||||| | || || |||||| | ||||| || || ||| | Sbjct 752 CAATTATGGTTTCTCCGCCAAGAATCTTTTTGCATTTATCAAGTGTTTCCTTCATTGATA 811 Query 21041 TATTGAGCGCGTCAATCGTTAGCGTTAGTGGAATGGCGAGTTTAGCCCCTGTTTTACTCT 21100 | ||| || |||| | ||| ||| ||||| | ||| | |||||||| || | Sbjct 812 TCCCGAGAGCATCAACATGCAATGTTGTTGGGATGGCAATTTTTACGCCTGTTTTGCTTT 871 Query 21101 GTTCAATGTGAAGATGGTTGTCGTTTATGTCTGACCATTTCATTCTGCACAAATCGCCTA 21160 | || | | ||||| || || || ||||| |||||| ||| ||||| || | Sbjct 872 GCTCGACATAAAGATATCCATCTACGATATCAGACCACTTCATTTCGCATAAATCACCAA 931 Query 21161 CTCTCTGCCCTGTAACGACAGCCAAATCCATTGCCAGTCTCAGCCAGATTGGGAGCGGTT 21220 ||| |||||| ||||| ||||||| |||||||| ||||| ||||| ||| | || Sbjct 932 CTCGCTGCCCGGTAACAACAGCCAGTTCCATTGCAAGTCTAAGCCAACATGGTGATGATT 991 Query 21221 CGGCTGCATGGTATATCGCGACATATTCATTAGCTGTCAGTCTTGAACGCCTTACTTCTG 21280 | ||||| || || || | ||||| | ||| || |||||||| | |||||| |||| Sbjct 992 CTGCTGCTTGATAAATTTTCAGGTATTCGTCAGCCGTAAGTCTTGATCTCCTTACCTCTG 1051 Query 21281 ATTTTGCTGTGCGGGTTGCTGTTACCGGATTCGTAGCCACATGCCCCTCGGCTATTGCCT 21340 ||||||| | ||| || |||| ||||| || || | | ||| || || ||||| |||| Sbjct 1052 ATTTTGCAGCGCGAGTGGCTGCGACCGGGTTTGTTGTTATATGGCCTTCAGCTATAGCCT 1111 Query 21341 CACGAAAAACGTCAACAAGGGTTGACCTGATCAATTTTGCGGAAGCCGATTTGCCTTCTG 21400 | || || | || || ||||| ||||| || || || || |||| ||||| || Sbjct 1112 CTCGGAATGCATCGCTCAGTGTTGATCTGATTAACTTGGCTGATGCCGCCTTGCCCTCGT 1171 Query 21401 CTACGTAGGTGTTTAGCATTGCTGCCACCTCTTTCGTTGATATGTCAGCGAGCGGTTTGT 21460 ||| ||| || |||||||| || | ||||| || | ||||| | || || | Sbjct 1172 CTATGTATCCATTGAGCATTGCCGCAATTTCTTTTGTGGTGATGTCTTCAAGTGGAGCAT 1231 Query 21461 CCGGCAATTTTCTTCGGATTGCTCTGATTTTGCTGGCGTAGTCGAGTAGAGTTTTCGGCC 21520 | |||| || | |||||| | |||||||| ||| | | || || ||| || Sbjct 1232 CAGGCAGACCCCTCCTTATTGCTTTAATTTTGCTCATGTAATTTATGAGTGTCTTCTGCT 1291 Query 21521 TGATACCCCT-CTCGCTGAGGATTGTTTCATATCGGTCAAGCCACGCATGAAGAGTGATT 21579 |||| || || || || |||||| |||| || || |||||||| | ||| | || | Sbjct 1292 TGATTCCTCTGCTGGCC-AGGATTTTTTCGTAGCGATCAAGCCATGAATGTAACGTAACG 1350 Query 21580 GCGTCAGCGCCTTTAATTCTGTCTATCAGTGACTCACGCCTGTTCCCGGATAGCAACTCA 21639 | | | | | || ||||| || |||| | || | ||| || || | |||||| Sbjct 1351 GAATTATCACTGTTGATTCTCGCTGTCAGAGGCTTGTGTTTGTGTCCTGAAAATAACTCA 1410 Query 21640 ATGTTGGCCTGTATAGCTTCAGTGATTGCGATTCGCCTGTCTCGGCCTAATCCAAACTCT 21699 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1411 ATGTTGGCCTGTATAGCTTCAGTGATTGCGATTCGCCTGTCTCGGCCTAATCCAAACTCT 1470 Query 21700 TTACCCGTCCTTGGGTCCCTGTAGCAGTAATATCCATTGTTTCTTATATAAAGGTTAGGG 21759 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1471 TTACCCGTCCTTGGGTCCCTGTAGCAGTAATATCCATTGTTTCTTATATAAAGGTTAGGG 1530 Query 21760 GGTAAATCCCGGCGCTCATGACTTCGCCTTCTTCCCATTTCTGATCCTCTTCAAAAGGCT 21819 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1531 GGTAAATCCCGGCGCTCATGACTTCGCCTTCTTCCCATTTCTGATCCTCTTCAAAAGGCT 1590 Query 21820 ACCTGTTACTGGTCGATTTAAGTCAACCTTTACCGCTGATTCGTGGAACAGATACTCTCT 21879 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1591 ACCTGTTACTGGTCGATTTAAGTCAACCTTTACCGCTGATTCGTGGAACAGATACTCTCT 1650 Query 21880 TCCATCCTTAACCGGAGGAGGGAATATCCTGCATTCGCGCACCCATCGACGAACTGTTTC 21939 ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| Sbjct 1651 TCCATCCTTAACCGGAGGAGGGAATATCCTGCACTCGCGTACCCATCGACGAACTGTTTC 1710 Query 21940 AAGGCTTCTTGGGCGTCGCTGGCGAGCGTTCCACTCCTGAAGTGTTAAGTACATCGCAAA 21999 |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct 1711 AAGGCTTCTTGGGCGTCGCTGGCGTGCGTTCCACTCCTGAAGTGTCAAGTACATCGCAAA 1770 Query 22000 GTCTCCGCAATTACACGCAAGAAAAAGCCGCATTGATGCGGC 22041 |||||||||||||||||||||||||| |||| | | ||||| Sbjct 1771 GTCTCCGCAATTACACGCAAGAAAAAACCGCCATCAGGCGGC 1812 Score = 401 bits (444), Expect = 2e-107 Identities = 259/281 (92%), Gaps = 2/281 (1%) Strand=Plus/Plus Query 22453 CAATAAAAAACCGCCATCAGGCGGTTTGGTGTTCTTTCAGTTCTTCAATTCGAATATTGG 22512 ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1788 CAAGAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATATTGG 1847 Query 22513 TTACGTCTGCATGTGCTATCTGCGCCCATATCATCCAGTGGTTATAGCAGTCGTTGATGT 22572 |||||||||||||||||||||||||||| | ||||||||||| |||||||||| |||||| Sbjct 1848 TTACGTCTGCATGTGCTATCTGCGCCCACAGCATCCAGTGGTCATAGCAGTCGCTGATGT 1907 Query 22573 CCTCTGCTTCGATAACTCTGTTGAATGGTTCTCCATTCCATTCACCTGTGACTCGGAAG- 22631 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1908 TCTCGGCTTCGATAACTCTGTTGAATGGTTCTCCATTCCATTCACCTGTGACTCGGAAGT 1967 Query 22632 GCATTTATCATCTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAAGAAATCCCC 22691 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1968 GCATTTATCATCTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAAGAAATCCTC 2027 Query 22692 GCGAATGCGAGGATTGTCATTCATTGTCGATATTCACCTTT 22732 | | |||||||| || ||||||| | ||| ||| ||| Sbjct 2028 GTCAGTGCGAGGA-TGCTGTTCATTGCTGCTATACACTTTT 2067 >seq3538 Length=6141 Score = 351 bits (388), Expect = 3e-92 Identities = 676/980 (69%), Gaps = 28/980 (3%) Strand=Plus/Plus Query 26693 CGTCATTTTGTTCAGCGCTCGTACCAGGGCCATAGCCTCTGC----AACCTGACCATCGT 26748 |||||| ||| |||||| |||| ||||| || || | ||||| | |||| Sbjct 1805 CGTCATCCGGTTTAGCGCTTTAACCATCGCCATCGCTTCGCCCACNNACCTGCGCGTCGT 1864 Query 26749 AGTCACGCAGTGTCA-GTGAACCCCCGAACAGCTGTTTTACCCGGTACATCGCCGTTTCC 26807 |||| ||||| ||| ||| | ||| || | ||| | ||| ||||||||||||| Sbjct 1865 AGTCTCGCAGGCTCAAGTGTCCGCCCAGCAAGGT-TTTGATACGGAACATCGCCGTTTCT 1923 Query 26808 GCTATCGAGCGACGGTTGTAATCTGTTGTCCATTTCCACCGCGCATTACTCCCGGTCATT 26867 || | || || |||| ||| || | || |||||| |||| | ||| ||| Sbjct 1924 GCCACGGAACGTCGGTGGTAGCCTACTTTCTTTTTCCATACGTCATTGCCACCGCTCAGA 1983 Query 26868 CGCTGATTAGCCACTGCACGGTTACGGTCTGCATATTCACCGGGCCAGTAACCCGCACCT 26927 ||||||||||||| ||| ||||||| || ||| || |||||||| ||| || Sbjct 1984 TGCTGATTAGCCACCGCATGGTTACGTTCATGGTATCTGCCCGGCCAGTATTGCGCCCCG 2043 Query 26928 TTTCGGGGAGGGATAAGCGCGCTGATTTTCTTACGCCGCAGTTCATCGTGACA-TAGCCG 26986 ||||| ||||||||||| | |||||||| || | | ||| |||| ||||| |||| | Sbjct 2044 TTTCGTGGAGGGATAAGTGGCCTGATTTTTTTCCTCAGCAACGCATCATGACAGTAGC-G 2102 Query 26987 GGTATCGTAAGCGCCATCGGCGGCGGCTGACCTGATTTTCCGGTGGGTTTGCCGGATTAA 27046 || || |||||||| || || | ||| || ||||| |||||||| || || | Sbjct 2103 CGTGTCATAAGCGCCGTCTGCTGAAGCTTCTCTTATTTTTCGGTGGGTCTGGTTAATCAG 2162 Query 27047 CCCGGGGAAGGCCTCTGAGTC---CGTAACGTTGTTCAGCGACAGGTCAGCGCAGATGAT 27103 ||| || | |||| | || |||| || || ||||| | || || ||||| || Sbjct 2163 CCCCGGCAGTGCCTGCGCATCTGTCGTACCGCTG---AGCGATAAATCGGCACAGATTAT 2219 Query 27104 TTCATGTGTTTTACTGTCAACGGCGAGATGCAGCTTACGCCAGATACGGCGGCGTTCCTG 27163 ||||| || || ||| | || ||||| || || ||||| | | ||| | || Sbjct 2220 CTCATGCGTCACACCGTCTGCAGCCAGATGAAGTTTGCGCCATACTCTGCGCCTGTCAGC 2279 Query 27164 GCCATGCTTTTTGACTTTCCACTCGCCTTCACCGAAGACCTTCAGCCCGGTGGAATCAAT 27223 ||||| | |||||||||| |||||||| |||||||||||||| || || | ||| || Sbjct 2280 CCCATGTTGCCTGACTTTCCATTCGCCTTCCCCGAAGACCTTCAGGCCAGTAGCATCGAT 2339 Query 27224 TACCAGGTGTGCGATTTCACCCCGGGTGGGCGTTTTGAAACTGACATTAACCGACTTTGC 27283 ||||| || | ||||||||||||||| |||||||| | |||| ||||| |||||| Sbjct 2340 AACCAGATGCGAGATTTCACCCCGGGTTGGCGTTTTTATGCTGATGTTAACGCTCTTTGC 2399 Query 27284 CCGCCTGCTGACACAG-CTGTAATCCGGGCAGCGTAGCGGAACGTTCATCAGAGAAAAAA 27342 | ||||||| ||| ||| |||||||| || ||||| | |||||| | ||||| Sbjct 2400 ATGTTTGCTGAC-CAGAGAGTAGTCCGGGCAACGCAGCGGCAGAGCCATCAGCGTAAAAA 2458 Query 27343 TGGAATCAATAAAGCCCTGCGCAGCGCGCAGGGTCAGCCTGAATACGCGTTTAATGACCA 27402 | || |||| |||||||| || || || | ||| | || ||||| || || | || Sbjct 2459 TCGAGTCAACGAAGCCCTGTAATGCCCGGAGTGGCAGATTAAACACGCGCTTCATCATCA 2518 Query 27403 GCACAGTCGTGATGGCAAGGTCAGAATAGCGCTGAGGTCTGCCTCGTGAAGAAGGTGTTG 27462 | || || ||||| || | || | ||| | |||| | || || ||| ||| Sbjct 2519 GAACCGTGGTGATCGCCATATCGGTGTAGTGGAGAGGCCGACCACGACCTTCAGGCTTTG 2578 Query 27463 CTGACTCATACCAGGCCTGAATAGCTTCATCATCCAGCCAGAAAGTTATGGAGCCACGGT 27522 | | ||| ||| || |||||| ||||| ||||||| || | || ||||| | Sbjct 2579 CGCAGTCAGTCCATGCAGCAATAGCAGATTCATCAAGCCAGATCGTCAGCGAACCACGCT 2638 Query 27523 TGATGAGGGCTTTATTGTAGGTGGGCCAGTTGGTGATTTTGAACTTTTGCTTTGCCACGG 27582 |||| || || ||||| | | ||||||||||||||| |||||||||||||||| || Sbjct 2639 GTCTGAGTGCCTTGTTGTAAGCTGACCAGTTGGTGATTTTAAACTTTTGCTTTGCCATGG 2698 Query 27583 AACGGTCTGCGTTGTCGGGAAGATAC-GT---GATCTGATCCTTCAACTCAGC-AAAAGT 27637 | | || || ||||| || || |||| ||||| ||| ||| | ||||| Sbjct 2699 ---TGAC-ACGATG--CTGAAGAGACTGTAACGATCAGATCCGCCAA-TCACCTGAAAGT 2751 Query 27638 TCGATTTATTCAACAAAGCC 27657 |||||||||||||||||||| Sbjct 2752 TCGATTTATTCAACAAAGCC 2771 >seq3951 Length=514 Score = 179 bits (198), Expect = 1e-40 Identities = 110/117 (94%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 38047 ATGAGCAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCA 38106 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 352 ATGAACAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCA 411 Query 38107 TGGGCTGTTAATCATTACCGTGATAATGCAATCGCCTACAAAGAACAGCGCGACAAA 38163 |||||||||||||||||||||||||| || || ||||||||| |||||||||||| Sbjct 412 TGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAA 468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130260896788092