Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_002167.1 Length=39732 Score E Sequences producing significant alignments: (Bits) Value seq2342 2634 0.0 seq3951 179 9e-41 seq2271 84.2 6e-12 >seq2342 Length=4104 Score = 2634 bits (2920), Expect = 0.0 Identities = 1541/1594 (97%), Gaps = 2/1594 (0%) Strand=Plus/Plus Query 21041 GACAAAAAATTAGCGCAAGAAGACAAAA--ATCACCTTGCGCTAATGCTCTGTCTCAGGT 21098 |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| Sbjct 219 GACAAAAAATTAGCGCAAGAAGACAAAAAAATCACCTTGCGCTAATGCTCTGTTACAGGT 278 Query 21099 CACTAATACTATCTAAGTAGTTGATTCATAGTGACTGGATATGTTGTGTTTTGTAGCATC 21158 ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 279 CACTAATACCATCTAAGTGGTTGATTCATAGTGACTGGATATGTTGTGTTTTGTAGCATT 338 Query 21159 ATGTAGTCTATTTTTTATACTAAAGATATTGTAACACATTGATATTAATGATTTTTAATG 21218 ||| ||||||||||||| ||| || ||| ||| | ||||||||||| |||||| | Sbjct 339 ATGCAGTCTATTTTTTAGACTGAATCAATTATAAGCCGTTGATATTAATTGTTTTTACCG 398 Query 21219 TTTCACGTTCAGCTTTTTTATACTAAGTTGGCATTATAAAAAAGCATTGCTTATCAATTT 21278 |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 399 TTTCACATTCAACTTTTTTATACTAAGTTGGCATTATAAAAAAGCATTGCTTATCAATTT 458 Query 21279 GTTGCAACGAACAGGTCACTATCAGTCAAAATAAAATCATTATTTGATTTCAATTTTGTC 21338 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 459 GTTGCAACGAACAGGTCACTATCAGTCAAAATAAAATCATTATTTGATTTCAATTTTGTC 518 Query 21339 CCACTCCCTGCCTCTGTCATCACGATACTGTGATGCCATGGTGTCCGACTTATGCCCGAG 21398 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 519 CCACTCCCTGCCTCTGTCATCACGATACTGTGATGCCATGGTGTCCGACTTATGCCCGAG 578 Query 21399 AAGATGTTGAGCAAACTTATCGCTTATCTGCTTCTCATAGAGTCTTGCAGACAAACTGCG 21458 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 579 AAGATGTTGAGCAAATTTATCGCTTATCTGCTTCTCATAGAGTCTTGCAGACAAACTGCG 638 Query 21459 CAACTCGTGAAAGGTAGGCGGATCCCCTTCGAAGGAAAGACCTGATGCTTTTCGTGCGCG 21518 ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| Sbjct 639 CAACTCGTGAAAGGTTGGCGGATCCCCTTCGAAGGAGAGACCTGATGCTTTTCGTGCGCG 698 Query 21519 CATAAAATACCTTGATACTGTGCCGGATGAAAGCGGTTCGCGACGAGTAGATGCAATTAT 21578 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 699 CATAAAATACCTTGATACTGTGCCGGATGAAAGCGGTTCACGACGAGTAGATGCAATTAT 758 Query 21579 GGTTTCTCCGCCAAGAATCTCTTTGCATTTATCAAGTGTTTCCTTCATTGATATTCCGAG 21638 |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| Sbjct 759 GGTTTCTCCGCCAAGAATCTTTTTGCATTTATCAAGTGTTTCCTTCATTGATATCCCGAG 818 Query 21639 AGCATCAACATGCAATGCTGTTGGGATGGCAATTTTTACGCCTGTTTTGCTTTGCTCGAC 21698 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 819 AGCATCAACATGCAATGTTGTTGGGATGGCAATTTTTACGCCTGTTTTGCTTTGCTCGAC 878 Query 21699 ATAAAGATATCCATCTACGATATCAGACCACTTCATTTCGCATAAATCACCAACTCGTTG 21758 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 879 ATAAAGATATCCATCTACGATATCAGACCACTTCATTTCGCATAAATCACCAACTCGCTG 938 Query 21759 CCCGGTAACAACAGCCAGTTCCATTGCAAGTCTGAGCCAACATGGTGATGATTCTGCTGC 21818 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 939 CCCGGTAACAACAGCCAGTTCCATTGCAAGTCTAAGCCAACATGGTGATGATTCTGCTGC 998 Query 21819 TTGATAAATTTTCAGGTATTCGTCAGCCGTAAGTCTTGATCTCCTTACCTCTGATTTTGC 21878 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 999 TTGATAAATTTTCAGGTATTCGTCAGCCGTAAGTCTTGATCTCCTTACCTCTGATTTTGC 1058 Query 21879 TGCGCGAGTGGCAGCGACCGGGTTTGTTGTTATATGGCCTTCAGCTATTGCCTCTCGGAA 21938 ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1059 AGCGCGAGTGGCTGCGACCGGGTTTGTTGTTATATGGCCTTCAGCTATAGCCTCTCGGAA 1118 Query 21939 TGCATCGCTCAGTGTTGATCTGATTAACTTGGCTGACGCAGCCTTGCCCTCGTCTATGTA 21998 |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| Sbjct 1119 TGCATCGCTCAGTGTTGATCTGATTAACTTGGCTGATGCCGCCTTGCCCTCGTCTATGTA 1178 Query 21999 TCCATTGAGCATTGCCGCAATTTCTTTTGTGGTGATGTCTTCAAGTGGAGCATCAGGCAG 22058 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1179 TCCATTGAGCATTGCCGCAATTTCTTTTGTGGTGATGTCTTCAAGTGGAGCATCAGGCAG 1238 Query 22059 CCCCCTCCTTATTGCTTTAATTTTGCTCATGTAATTTATGAGTGTCTTCTGCTTGATTCC 22118 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1239 ACCCCTCCTTATTGCTTTAATTTTGCTCATGTAATTTATGAGTGTCTTCTGCTTGATTCC 1298 Query 22119 TCTGCTGGCGAGGATTTTTTCGTAGCGATCAAGCCATGAATGTAACGTAACAGAATTATC 22178 ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1299 TCTGCTGGCCAGGATTTTTTCGTAGCGATCAAGCCATGAATGTAACGTAACGGAATTATC 1358 Query 22179 ACTGTTGATTCTTGCTGTCAGAGGCTTGTGTTTGTGTCCTGAAAATAACTCAATGTTGGC 22238 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1359 ACTGTTGATTCTCGCTGTCAGAGGCTTGTGTTTGTGTCCTGAAAATAACTCAATGTTGGC 1418 Query 22239 CTGTATAGCTTCAGTGATTGCTATCCTCCTGTCTCGGCCTAATCCGAACTCTTTACCCGT 22298 ||||||||||||||||||||| || | |||||||||||||||||| |||||||||||||| Sbjct 1419 CTGTATAGCTTCAGTGATTGCGATTCGCCTGTCTCGGCCTAATCCAAACTCTTTACCCGT 1478 Query 22299 CCTTGGGTCCCTGTAGCAGTAATATCCATTGTTTCTTATATAAAGGTTAGGGGGTAAATC 22358 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1479 CCTTGGGTCCCTGTAGCAGTAATATCCATTGTTTCTTATATAAAGGTTAGGGGGTAAATC 1538 Query 22359 CCGGCGCTCATGACTTCGCCTTCTTCCCATTTCTGATCCTCTTCAAAAGGCTACCTGTTA 22418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1539 CCGGCGCTCATGACTTCGCCTTCTTCCCATTTCTGATCCTCTTCAAAAGGCTACCTGTTA 1598 Query 22419 CTGGTCGATTTAAGTCAACCTTTACCGCTGATTCGTGGAACAGATACTCTCTTCCATCCT 22478 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1599 CTGGTCGATTTAAGTCAACCTTTACCGCTGATTCGTGGAACAGATACTCTCTTCCATCCT 1658 Query 22479 TAACCGGAGGAGGGAATATCCTGCATTCGCGCACCCATCGACGAACTGTTTCAAGGCTTC 22538 ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| Sbjct 1659 TAACCGGAGGAGGGAATATCCTGCACTCGCGTACCCATCGACGAACTGTTTCAAGGCTTC 1718 Query 22539 TTGGGCGTCGCTGGCGAGCGTTCCACTCCTGAAGTGTCAAGTACATCGCAAAGTCTCCGC 22598 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1719 TTGGGCGTCGCTGGCGTGCGTTCCACTCCTGAAGTGTCAAGTACATCGCAAAGTCTCCGC 1778 Query 22599 AATTACACGCAAGAAAAAGCCGCATTGATGCGGC 22632 |||||||||||||||||| |||| | | ||||| Sbjct 1779 AATTACACGCAAGAAAAAACCGCCATCAGGCGGC 1812 >seq3951 Length=514 Score = 179 bits (198), Expect = 9e-41 Identities = 110/117 (94%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 37025 ATGAGCAGAGTCACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTTTGCCTGTCA 37084 |||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 352 ATGAACAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCA 411 Query 37085 TGGGCTGTTAATCATTACCGTGATAACGCCATCGCCTACAAAGAGCAGCGCGACAAA 37141 |||||||||||||||||||||||||||||||| ||||||||| |||||||||||| Sbjct 412 TGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAA 468 >seq2271 Length=37941 Score = 84.2 bits (92), Expect = 6e-12 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 22906 ACATCTCTACCCCCTGCGCCCGTACTTCAGCCAGGAAAGCATCGGTGGCTGGGGTTTCGA 22965 ||||||| || ||||||||||| ||||||||||||||||| || || || |||||||||| Sbjct 17128 ACATCTCCACACCCTGCGCCCGCACTTCAGCCAGGAAAGCGTCTGTCGCCGGGGTTTCGA 17069 Query 22966 TATC 22969 |||| Sbjct 17068 TATC 17065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127000614965896