Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq1158 140 3e-28 seq444 122 8e-23 seq60 120 3e-22 seq974 82.4 7e-11 >seq1158 Length=25781 Score = 140 bits (154), Expect = 3e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | || ||||| |||||||||||||||||| | |||||| |||||| Sbjct 9270 CACCAAGTGAAGGGTTGACTCCTTTTGAATGTTGTAATCGGAGAGAGTGCGACCATCCTC 9329 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||| || || || ||| |||||||||| || |||||||| || || |||||||| ||| Sbjct 9330 GAGTTGCTTGCCGGCGAAGATGAGACGTTGTTGATCGGGTGGGATACCCTCCTTATCTTG 9389 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| || || || | |||| ||| || | | ||||||||| | ||| | || || Sbjct 9390 AATCTTGGTCTTGACGTTCTCGATGGTATCGGAACCCTCGACCTCCAAGGTAATTGTCTT 9449 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || || || ||||||||||| Sbjct 9450 ACCAGTGAGGGTCTTGACGAAAATCTGCAT 9479 Score = 118 bits (130), Expect = 9e-22 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595 |||| || ||||| |||||||| ||||| ||| | ||| || |||||||||||| Sbjct 9505 TGGAGGGTGGACTCCTTTTGAATATTGTAGTCGGAGAGAGTACGACCATCCTCGAGCTGC 9564 Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 || |||||| |||| | ||| || || || || || || |||||||||||| ||| || Sbjct 9565 TTACCAGCGAAGATCAAACGTTGTTGGTCAGGTGGAATACCCTCCTTGTCTTGAATCTTG 9624 Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTC 118715 || || | |||| |||||| | | ||| ||||||| || | || || ||||| Sbjct 9625 GTCTTGACGTTCTCGATGGTGTCAGAACCCTCAACCTCGAGAGTGATGGTCTTACCGGTG 9684 Query 118716 AGAGTTTTTACAAAAATCTGCAT 118738 || || || |||||||| ||||| Sbjct 9685 AGGGTCTTAACAAAAATTTGCAT 9707 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595 |||| || ||||| ||||| |||||||| ||| | || || ||||| || || Sbjct 9049 TGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTACGACCGTCCTCAAGTTGC 9108 Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 || ||||| |||||||||| || |||||||| || || |||||||||||| ||| || Sbjct 9109 TTACCAGCAAAGATGAGACGTTGTTGATCGGGTGGGATACCCTCCTTGTCTTGAATCTTG 9168 Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTC 118715 || || | |||| ||| || | | ||| ||||| | ||| | || || || ||| Sbjct 9169 GTCTTGACGTTCTCGATGGTATCAGAACCCTCAACCTCAAGGGTGATGGTCTTACCAGTC 9228 Query 118716 AGAGTTTTTACAAAAATCTGCAT 118738 | || || ||||| || ||||| Sbjct 9229 AAGGTCTTGACAAAGATTTGCAT 9251 >seq444 Length=38654 Score = 122 bits (134), Expect = 8e-23 Identities = 167/232 (72%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || ||||| ||||| |||||||||||| | ||| || |||||| Sbjct 5025 ACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCGGAGAGAGTACGACCATCCTCA 4966 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || || || || || |||||||||| || || || || || || |||||||||||| Sbjct 4965 AGTTGCTTGCCGGCAAAGATGAGACGTTGTTGGTCAGGTGGAATTCCCTCCTTGTCTTGG 4906 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| || || | | ||||||||| | ||| | || ||| Sbjct 4905 ATCTTGGTCTTGACGTTCTCGATAGTATCGGAACCCTCGACCTCCAAGGTAATAGTCTTG 4846 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATGGCTTATTCTATTACTCGTTTAC 118761 || ||||||||||| ||||| || ||||| | || || |||| | ||| || Sbjct 4845 CCTGTCAGAGTTTTAACAAAGATTTGCATTG-TTGTTTAATTATTTGTTGAC 4795 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || ||||| ||||| |||||||| || | || || |||||| Sbjct 5709 ACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGAAAGGGTACGACCATCCTCA 5650 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || || || ||||| |||||||||| || || || || || || |||||||||||| | Sbjct 5649 AGTTGCTTACCAGCAAAGATGAGACGTTGTTGGTCAGGTGGGATACCCTCCTTGTCTTGA 5590 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | || | |||||| | | ||||||||||| || | || || Sbjct 5589 ATCTTGGTCTTGACATTCTCAATGGTGTCAGAACCCTCGACCTCGAGAGTGATGGTCTTA 5530 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||| || || || || || ||||| Sbjct 5529 CCAGTCAAGGTCTTGACGAAGATTTGCAT 5501 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595 |||| || ||||| ||||| |||||||| || | ||| || |||||||||||| Sbjct 5247 TGGAGAGTGGACTCCTTTTGGATGTTGTAGTCAGAAAGAGTACGACCATCCTCGAGCTGC 5188 Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 || |||||| |||||||||| || || || || || || || ||||||||| || || Sbjct 5187 TTACCAGCGAAGATGAGACGTTGTTGGTCAGGTGGGATACCTTCCTTGTCTTGGATCTTG 5128 Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTC 118715 || || | || | |||||| | | ||||||||| | || | || || || || Sbjct 5127 GTCTTGACATTCTCAATGGTGTCAGAACCCTCGACCTCAAGAGTGATGGTCTTACCAGTG 5068 Query 118716 AGAGTTTTTACAAAAATCTGCAT 118738 || || || || || || ||||| Sbjct 5067 AGGGTCTTAACGAAGATTTGCAT 5045 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595 |||| || ||||| ||||| |||||||||||| | ||| || |||||| || || Sbjct 5475 TGGAGGGTGGACTCCTTTTGGATGTTGTAATCGGAGAGAGTACGACCATCCTCAAGTTGC 5416 Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 || || || |||||||||| || || || || || || |||||||||||| || || Sbjct 5415 TTGCCGGCAAAGATGAGACGTTGTTGGTCAGGTGGGATACCCTCCTTGTCTTGGATCTTG 5356 Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTC 118715 || || | |||| || || | | |||||||| | ||| | || || || || Sbjct 5355 GTCTTGACGTTCTCGATAGTATCGGAACCTTCGACCTCAAGGGTGATGGTCTTACCAGTG 5296 Query 118716 AGAGTTTTTACAAAAATCTGCAT 118738 || || || || || || ||||| Sbjct 5295 AGGGTCTTGACGAAGATTTGCAT 5273 >seq60 Length=27343 Score = 120 bits (132), Expect = 3e-22 Identities = 153/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||||| || ||||| ||||| |||||||| || | ||||| |||||| Sbjct 11533 ACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAGTCCGAAAGGGTGCGACCATCCTCA 11592 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || || || || ||| |||| ||||| || || ||||| || || |||||||||||| Sbjct 11593 AGTTGCTTACCGGCGAAGATAAGACGTTGTTGGTCGGGGGGGATACCCTCCTTGTCTTGG 11652 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| | || ||||||||||| || | || || Sbjct 11653 ATCTTGGCCTTGACGTTCTCGATGGTGTCAGAGCCCTCGACCTCGAGTGTGATGGTCTTT 11712 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATGG 118740 || |||| || || || || |||||||||| Sbjct 11713 CCTGTCAATGTCTTAACGAAGATCTGCATGG 11743 >seq974 Length=18895 Score = 82.4 bits (90), Expect = 7e-11 Identities = 117/165 (71%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || ||||| || || |||||||| || | || || ||||| | ||| Sbjct 4860 GTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTACGACCGTCCTCCAACTG 4919 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || |||||| |||| | ||| || |||||||| || || |||||||||||| || || Sbjct 4920 CTTACCAGCGAAGATCAAACGTTGTTGATCGGGGGGGATTCCCTCCTTGTCTTGGATCTT 4979 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGT 118699 || || | |||| |||||| | || ||||||||| | ||| Sbjct 4980 GGCCTTGACATTCTCGATGGTGTCTGAGCCCTCGACCTCAAGGGT 5024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433759645244344