Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq1158 98.7 1e-15 seq444 95.1 1e-14 >seq1158 Length=25781 Score = 98.7 bits (108), Expect = 1e-15 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||||||||||||||| || | ||||| || | || || ||||||||||||||||| Sbjct 9516 CTCCTTTTGAATATTGTAGTCGGAGAGAGTACGACCATCCTCGAGCTGCTTACCAGCGAA 9575 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCG 43110 || | || || ||||| | || | | |||||||| | ||| | || || |||| Sbjct 9576 GATCAAACGTTGTTGGTCAGGTGGAATACCCTCCTTGT-CTTGAATCTTGGTCTTGACGT 9634 Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 || | | ||||| || || |||| |||||||| || || || || ||||| | Sbjct 9635 TCTCGATGGTGTCAGAACCCTCAACCTCGAGAGTGATGGTCTTACCGGTGAGGGTCTTAA 9694 Query 43171 CAAAGATTTGCAT 43183 |||| |||||||| Sbjct 9695 CAAAAATTTGCAT 9707 Score = 93.3 bits (102), Expect = 5e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 ||||| || | ||| ||||||||| || ||||| || | || || || | || || Sbjct 9727 ACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGACCATCCTCA 9786 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 || ||||||||||| || ||||| || || ||||| | || | | |||||| || | Sbjct 9787 AGTTGCTTACCAGCAAAGATGAGACGTTGTTGGTCAGGTGGGATACCCTCCTTATCTTGG 9846 Query 43095 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 43154 || || |||| || | | || ||| || || || | |||||||| ||| Sbjct 9847 ATCTTGGTCTTGACGTTCTCGATGGTATCGGAACCCTCAACCTCCAAGGTGATGGTCTTG 9906 Query 43155 CCCGTTAGCGTCTTTACAAAGATTTGCATTTTTA 43188 || || || |||||||||||||||||||| |||| Sbjct 9907 CCAGTCAGTGTCTTTACAAAGATTTGCATGTTTA 9940 Score = 82.4 bits (90), Expect = 9e-11 Identities = 160/234 (68%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 42951 TATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAA 43010 ||||| || || | | ||| | || | ||| | ||| ||||||||| || ||||| Sbjct 9019 TATTGACCACCACGAAGACGGAGGACGAGATGGAGAGTGGACTCCTTTTGGATGTTGTAG 9078 Query 43011 TCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCG 43070 || | || || || |||| || || ||||||||||| || ||||| || || || ||| Sbjct 9079 TCGGAAAGGGTACGACCGTCCTCAAGTTGCTTACCAGCAAAGATGAGACGTTGTTGATCG 9138 Query 43071 GCCGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCGA 43129 | || | | |||||||| | ||| | || || |||| || | | || || Sbjct 9139 GGTGGGATACCCTCCTTGT-CTTGAATCTTGGTCTTGACGTTCTCGATGGTATCAGAACC 9197 Query 43130 TTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || || | |||||||| || || || | ||||| |||||||||||||| Sbjct 9198 CTCAACCTCAAGGGTGATGGTCTTACCAGTCAAGGTCTTGACAAAGATTTGCAT 9251 >seq444 Length=38654 Score = 95.1 bits (104), Expect = 1e-14 Identities = 163/234 (70%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 42951 TATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAA 43010 ||||| ||||| | | ||| | ||||| || | ||| ||||||||| || ||||| Sbjct 5733 TATTGACCTCCACGAAGACGGAGAACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAG 5674 Query 43011 TCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCG 43070 |||| || || || | || || || ||||||||||| || ||||| || || ||||| Sbjct 5673 TCAGAAAGGGTACGACCATCCTCAAGTTGCTTACCAGCAAAGATGAGACGTTGTTGGTCA 5614 Query 43071 GCCGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCGA 43129 | || | | |||||||| | ||| | || || |||| || | | ||||| Sbjct 5613 GGTGGGATACCCTCCTTGT-CTTGAATCTTGGTCTTGACATTCTCAATGGTGTCAGAACC 5555 Query 43130 TTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || |||| |||||||| || || || | ||||| || ||||||||||| Sbjct 5554 CTCGACCTCGAGAGTGATGGTCTTACCAGTCAAGGTCTTGACGAAGATTTGCAT 5501 Score = 89.7 bits (98), Expect = 6e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||||||||| || ||||| |||| ||||| || | || || ||||||||||||||||| Sbjct 5236 CTCCTTTTGGATGTTGTAGTCAGAAAGAGTACGACCATCCTCGAGCTGCTTACCAGCGAA 5177 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| || || ||||| | || | | |||||||| ||| || |||| | Sbjct 5176 GATGAGACGTTGTTGGTCAGGTGGGATACCTTCCTTGTCTTGGATCTTGGTCTTGACATT 5117 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | ||||| || || || | |||||||| || || || || ||||| || Sbjct 5116 CTCAATGGTGTCAGAACCCTCGACCTCAAGAGTGATGGTCTTACCAGTGAGGGTCTTAAC 5057 Query 43172 AAAGATTTGCAT 43183 ||||||||||| Sbjct 5056 GAAGATTTGCAT 5045 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571721949210960