Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq232 228 8e-55 seq2491 141 9e-29 seq915 96.9 3e-15 seq2141 86.0 6e-12 >seq232 Length=384298 Score = 228 bits (252), Expect = 8e-55 Identities = 569/857 (66%), Gaps = 18/857 (2%) Strand=Plus/Minus Query 15944 TTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTT 16003 |||||||| || ||| | |||||||||||||| |||||||| | | |||||| | Sbjct 339490 TTTTGATACTCTGCAACACGTTTTTCAAAGAAATTAGTTTTTCCCTGAAGTGAAATCATA 339431 Query 16004 TCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAACAAT 16063 ||||| ||||| || |||||| ||| | || || || |||||||| | ||| Sbjct 339430 TCCATGAAATCGAATGGATTTGCTGATCCGTAAACACGCTCACAGCCCAATTCTACTAAT 339371 Query 16064 AATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAAT 16123 |||||||| || || || |||| ||||||| |||| | | || |||||| || ||||| Sbjct 339370 AATCTATCGGCAACGAACTCTAAATACTGTGTCATAAGACCAGCGTTCATACCAATTAAA 339311 Query 16124 TTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATA 16183 | || || | | |||||| | ||| | | |||| |||| | || || | || || Sbjct 339310 CTTACCGGAAGAGATTCTGTGATAAATTGTCTTTCGATATCTAAAGCATCGACAATAATT 339251 Query 16184 TCTCTTACTACACTATTTAACGGAGGGTTTAATAA---GTGTTTAAACATTATACAAGCA 16240 ||| | | | | ||| | ||||| || ||| || || | ||| Sbjct 339250 TCTTTAATTCTATCTTTTGGCACTTTGTTTACCAAATGGTGATTGTGCAGGTGAACCGCA 339191 Query 16241 AAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGC 16300 ||||||||||| | |||||||| | | || || || || || ||||| | ||||||| Sbjct 339190 AAATCACAATGTACACCTTCGTCACGAGAAATCAATTCATTAGAGAATGTTAAACCTGGC 339131 Query 16301 ATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCT 16360 |||| || |||||||| | |||| | || | || | || || || || || ||| Sbjct 339130 ATTAAACCACGTTTTTTCAACCAATAAATTGAACAGAAAGCTCCCGAGAAAAAGATTCCT 339071 Query 16361 TCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctatccat 16420 |||||||| ||||| |||| | || ||| | | | | | ||| |||||| Sbjct 339070 TCAACTGCAGCAAAAGCAATTAGTCTTTCAGCAAATG------AATCAGATTCGATCCAT 339017 Query 16421 tttttagcccaatttgctttttgtttAA-CACAGTTCATGTTCTCTATTGCATTAAATAA 16479 ||| |||||| | |||||||| |||| ||| | | |||| |||||||| || Sbjct 339016 TTTAAAGCCCATTCTGCTTTTTTCTTAATTGCAGGAAAAACT-TCTAAAGCATTAAACAA 338958 Query 16480 ATAAtttttttCTTTGCT--ATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCT 16537 | |||||| |||| ||| | ||| ||||| |||| |||| ||| | || Sbjct 338957 CTCTGATTTTTC--TGCTTCGTCTTTTACATACGTATCAATTAATAAAGAATAAGTCTCA 338900 Query 16538 GAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGT 16597 |||||||||||||| ||||| |||||||||||| | | ||||||| ||| Sbjct 338899 CTGTGAATATTCTCCATCATGATCTGGAAACCATAAAAGAACTTTGCTTCGGCGTATTGA 338840 Query 16598 ACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAA 16657 || || ||| | || || | |||||||| || ||||| || ||| |||||| Sbjct 338839 ACCTCGTTAACAAAATTCTCAGCCAGATTTTCGTTTACGATTCCGTCTGAAGCAGCAAAA 338780 Query 16658 AACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTT--TTA-ACCAGTCA 16714 || || | || |||||||| |||| ||||| || ||||| ||| ||| || Sbjct 338779 AATGCTAAAATATGTTTAATGAAATAACGTTCGTCGTCATTAAGTTTATTATTCCAATCT 338720 Query 16715 GAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTA 16774 | ||||| | |||||||| ||||| ||||||| ||| ||| | |||||| Sbjct 338719 GTTAAATCCTGATGTAAATCGATTTCTTCGGCAGTCCAGAAACTAGCTTCCATTTTTTTA 338660 Query 16775 TACATTTTCCATATGTC 16791 ||| || ||| || || Sbjct 338659 TACCATTCCCAAATATC 338643 >seq2491 Length=10632 Score = 141 bits (156), Expect = 9e-29 Identities = 487/747 (65%), Gaps = 18/747 (2%) Strand=Plus/Minus Query 15942 TTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATAT 16001 |||||||||| |||| || | || ||||||||||| ||||| |||| | || || Sbjct 4865 TTTTTTGATAATCACCCACACGTTTCTCAAAGAAATTGGTTTTGCCTTGCAGGGAGATCA 4806 Query 16002 TTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCAT--CCCAATTCCAA 16059 | |||||||||||||| ||||| | | | ||| ||||| | | || |||| |||| Sbjct 4805 TCTCCATAAAATCAAACGGATTGGTGGCATGATA-TATTT-TGGTATAACCCAGTTCCTG 4748 Query 16060 CAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTAT 16119 || |||| || || ||||| || ||||||||| ||| | | ||||| || || Sbjct 4747 CAGCCATCTGTCTGCAACAAACTCAATATACTGTGACATCAGTTTTGCATTCATCCCGAT 4688 Query 16120 TAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGAT 16179 | ||| || | || ||||| | ||| | ||||| || | ||||| || ||| Sbjct 4687 CAGGGCAACCGGCAAGGCATCTGTAATAAATTCCTTTTCGATTTCTACCGCGTCGCGGAT 4628 Query 16180 TATATCTCTTACTAC-ACTATTTAACGGAGGGT-TTAATAAG-TGTTTAAACATTATACA 16236 || || | | || ||| | | || | || | || |||| | | | || Sbjct 4627 AAT-TCCATGA--ACGACTTCCTGGCTCAGTTTATTTTTGAGCATTTTATAAAGCAGGCA 4571 Query 16237 AGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACC 16296 ||||| |||||||||| || || || || || ||||| || ||| || || || Sbjct 4570 GGCAAATTCACAATGCATCCCCTCATCTCTGGAAATCAACTCATTACTAAAGGTTAGCCC 4511 Query 16297 TGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAG-AAAAGAATA 16355 |||||| || |||| |||||| | ||| || || | || | | || | ||||| | Sbjct 4510 TGGCATCAGGCCTCTTTTTTTCAACCAGAAGATCG-AACAGAAGCTCCCGCTGAAGAAAA 4452 Query 16356 TACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttcta 16415 | ||||| |||||||| || || ||||| || || | | |||| | || | Sbjct 4451 TGCCTTCCACTGCGGCGAAAGCCACCAAACGTTCGGCAAA------ATTTCCGCCCTCAA 4398 Query 16416 tccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAA 16475 |||| ||||| | |||||||| || ||||| | |||||| |||| | Sbjct 4397 TCCAGCGCAATGCCCATTCTGCTTTTTTCTTTACACAAGGAACCGTCTCTACGGCATGGA 4338 Query 16476 ATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTT 16535 | | | |||||||| |||| |||||| ||||| || || | ||| ||| Sbjct 4337 ACAGCCTGTCTTTTTCTTCAGGATCTTTAATATAGGTATCGATCAGCAGCGCATAGGTTT 4278 Query 16536 CTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTT 16595 | || || || || ||||| ||||| || |||||||| || | ||||||| | | Sbjct 4277 CAGAGTGGATGTTTTCCATCATGATCTGGAAGCCATAAAAACAACGGGCTTCGGGAAGCT 4218 Query 16596 GTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAA 16655 ||||||| || | |||| | |||||| || || || || || || || |||| Sbjct 4217 GTACTTCGCTCATGAAGTTCACTGCAAGGTTTTCATTTACAATGCCGTCACTTGCAGCAA 4158 Query 16656 AAAACGCAAGTATGTGTTTAATAAAAt 16682 |||| |||||||| || ||| |||| Sbjct 4157 AAAAAGCAAGTATATGAGAAATGAAAT 4131 >seq915 Length=13476 Score = 96.9 bits (106), Expect = 3e-15 Identities = 196/287 (68%), Gaps = 7/287 (2%) Strand=Plus/Minus Query 16234 ACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAG 16293 ||| ||||| ||||| || | || ||||| | ||| || | |||||| || ||||| | Sbjct 287 ACAGGCAAAGTCACAGTGAAGACCCTCGTCACGACTGATGAGCTCGTTAGAGAATGTCAA 228 Query 16294 ACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAA 16353 || ||||| | || || || || | |||||| || | | || |||| || || Sbjct 227 TCCGGGCATCAAGCCACGCTTCTTGAGCCAAAAGATGGAGCAGAAGCTACCACTGAAAAA 168 Query 16354 TATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttc 16413 ||||| || || || ||||| || ||||| |||||| | | | | || | || Sbjct 167 GATACCCTCTACAGCTGCAAAGGCGACCAAACGCTCAGCAAATG----ACTTGGAGTTGG 112 Query 16414 ta-tccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCAT 16472 || ||||| | ||||||| | || || | || ||||| ||| |||| || |||| Sbjct 111 TAATCCATCTCATAGCCCACTCAGCCTTCTTCTTTACACATGGAATGGTCTCGATGGCAT 52 Query 16473 TAAATAAATAAtt-tttttCTTTGCTATCTAAAATATAAGTATCTAT 16518 ||||||||| || ||||||| | ||| |||||||||||| || Sbjct 51 TAAATAAATTCTTCTTTTTCTCAGGATTCT-TAATATAAGTATCAAT 6 >seq2141 Length=1138 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 16526 CTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCT 16585 ||||| | |||||||||||||| || || || || || |||||||| || ||||||||| Sbjct 71 CTATAAGTCTCTGAATGAATATTTTCAATGGCAATTTGGAAACCATAGAAACATCTAGCT 130 Query 16586 TCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCG 16645 || | ||||| || || || || || || ||||| || || || || ||||| Sbjct 131 TCAGGGATTTGGACCTCTGACATGAATCTGGTGGCCAAGTTCTCATTGACGATACCATCA 190 Query 16646 CTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAA 16680 || || ||||| || || | | || | ||||||| Sbjct 191 CTGGCAGCAAAGAAAGCCAAGACGTTTGTAATAAA 225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462434633305200