Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_002730.1 Length=38297 Score E Sequences producing significant alignments: (Bits) Value seq3951 244 3e-60 seq2342 131 4e-26 >seq3951 Length=514 Score = 244 bits (270), Expect = 3e-60 Identities = 152/163 (93%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 17319 ATGAGCAGGGTCACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTTTGCCTGTCA 17378 |||| ||| || |||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 352 ATGAACAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCA 411 Query 17379 TGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGAGCAGCGCGACAAAAAC 17438 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 412 TGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAAT 471 Query 17439 ACCAGAGAACTGAAGCTGGCGAACGCCACCATTACTGACATGC 17481 ||||||||||||||||||||||||| | ||||||||||||| Sbjct 472 GCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGACATGC 514 >seq2342 Length=4104 Score = 131 bits (144), Expect = 4e-26 Identities = 81/87 (93%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 47 GGATCACTCTACCTTTTCATCAAGCCAGTCCGCCCACCACTGCATCATTTCTCTGCGCTT 106 |||| |||| || |||||||||||||| |||| ||||||||||||||||||||||||||| Sbjct 113 GGATTACTCCACTTTTTCATCAAGCCAATCCGTCCACCACTGCATCATTTCTCTGCGCTT 172 Query 107 ATCGAGATACTGAGCATGGTTGTAAAT 133 ||||||||||||||| ||||||||||| Sbjct 173 ATCGAGATACTGAGCGTGGTTGTAAAT 199 Score = 114 bits (126), Expect = 3e-21 Identities = 66/68 (97%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 1695 CAGGCAATAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATA 1754 || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1784 CACGCAAGAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATA 1843 Query 1755 TTGGTTAC 1762 |||||||| Sbjct 1844 TTGGTTAC 1851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 122409344686356