Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq1158 125 6e-24 seq444 116 3e-21 seq60 104 2e-17 >seq1158 Length=25781 Score = 125 bits (138), Expect = 6e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || ||| |||||| || |||||||||||| || |||| | || || Sbjct 9727 ACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGACCATCCTCA 9786 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 ||||| || || || || || | || |||||||| || || | ||||||||| || Sbjct 9787 AGTTGCTTACCAGCAAAGATGAGACGTTGTTGGTCAGGTGGGATACCCTCCTTATCTTGG 9846 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | | || |||||| ||||||| ||| || |||||| Sbjct 9847 ATCTTGGTCTTGACGTTCTCGATGGTATCGGAACCCTCAACCTCCAAGGTGATGGTCTTG 9906 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 || ||||| ||||| ||||||||||||||||| Sbjct 9907 CCAGTCAGTGTCTTTACAAAGATTTGCATGTT 9938 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || |||||| ||||||||||| ||| || |||| | || || Sbjct 9271 ACCAAGTGAAGGGTTGACTCCTTTTGAATGTTGTAATCGGAGAGAGTGCGACCATCCTCG 9330 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 ||||| || |||||||| || | || ||||| ||||| || | ||||||||| || | Sbjct 9331 AGTTGCTTGCCGGCGAAGATGAGACGTTGTTGATCGGGTGGGATACCCTCCTTATCTTGA 9390 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | | || |||||| ||||||| |||||| ||||| Sbjct 9391 ATCTTGGTCTTGACGTTCTCGATGGTATCGGAACCCTCGACCTCCAAGGTAATTGTCTTA 9450 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || ||||| || || || ||||| Sbjct 9451 CCAGTGAGGGTCTTGACGAAAATCTGCAT 9479 Score = 105 bits (116), Expect = 5e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGT 45193 || || ||| |||||| || |||||||||||| || ||| |||| || ||||| Sbjct 9049 TGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTACGACCGTCCTCAAGTTGC 9108 Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253 || || || || || | || ||||| ||||| || | |||||||||||| ||| || Sbjct 9109 TTACCAGCAAAGATGAGACGTTGTTGATCGGGTGGGATACCCTCCTTGTCTTGAATCTTG 9168 Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313 ||| || | | | | | || |||||| ||||| | ||| || ||||| || ||| Sbjct 9169 GTCTTGACGTTCTCGATGGTATCAGAACCCTCAACCTCAAGGGTGATGGTCTTACCAGTC 9228 Query 45314 AGAGTCTTCACAAAGATTTGCAT 45336 | ||||| |||||||||||||| Sbjct 9229 AAGGTCTTGACAAAGATTTGCAT 9251 Score = 105 bits (116), Expect = 5e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGT 45193 || || ||| |||||| ||||| ||||||||| || ||| | || || || || Sbjct 9505 TGGAGGGTGGACTCCTTTTGAATATTGTAGTCGGAGAGAGTACGACCATCCTCGAGCTGC 9564 Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253 || || ||||| ||||| || |||||||| || || | |||||||||||| ||| || Sbjct 9565 TTACCAGCGAAGATCAAACGTTGTTGGTCAGGTGGAATACCCTCCTTGTCTTGAATCTTG 9624 Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313 ||| || | | | | |||| |||||| ||||| | || || ||||| || || Sbjct 9625 GTCTTGACGTTCTCGATGGTGTCAGAACCCTCAACCTCGAGAGTGATGGTCTTACCGGTG 9684 Query 45314 AGAGTCTTCACAAAGATTTGCAT 45336 || ||||| ||||| |||||||| Sbjct 9685 AGGGTCTTAACAAAAATTTGCAT 9707 >seq444 Length=38654 Score = 116 bits (128), Expect = 3e-21 Identities = 155/214 (72%), Gaps = 1/214 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || ||| |||||| || |||||||| ||| || ||| | || || Sbjct 5025 ACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCGGAGAGAGTACGACCATCCTCA 4966 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 ||||| || ||||| || || | || |||||||| || || | ||||||||||| Sbjct 4965 AGTTGCTTGCCGGCAAAGATGAGACGTTGTTGGTCAGGTGGAATTCCCTCCTTGTCTTGG 4906 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | || |||||| ||||||| |||||| |||||| Sbjct 4905 ATCTTGGTCTTGACGTTCTCGATAGTATCGGAACCCTCGACCTCCAAGGTAATAGTCTTG 4846 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCA-TGTTG 45340 || |||||||| || ||||||||||||| ||||| Sbjct 4845 CCTGTCAGAGTTTTAACAAAGATTTGCATTGTTG 4812 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || ||| |||||| || ||||||||||| || ||| | || || Sbjct 5709 ACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGAAAGGGTACGACCATCCTCA 5650 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 ||||| || || || || || | || |||||||| || || | |||||||||||| | Sbjct 5649 AGTTGCTTACCAGCAAAGATGAGACGTTGTTGGTCAGGTGGGATACCCTCCTTGTCTTGA 5590 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| |||||| ||||| | || || ||||| Sbjct 5589 ATCTTGGTCTTGACATTCTCAATGGTGTCAGAACCCTCGACCTCGAGAGTGATGGTCTTA 5530 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| ||||| || ||||||||||| Sbjct 5529 CCAGTCAAGGTCTTGACGAAGATTTGCAT 5501 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGT 45193 || || ||| |||||| || ||||||||||| || ||| | || || || || Sbjct 5247 TGGAGAGTGGACTCCTTTTGGATGTTGTAGTCAGAAAGAGTACGACCATCCTCGAGCTGC 5188 Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253 || || ||||| || | || |||||||| || || | ||| |||||||| || || Sbjct 5187 TTACCAGCGAAGATGAGACGTTGTTGGTCAGGTGGGATACCTTCCTTGTCTTGGATCTTG 5128 Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313 ||| || | | | | |||| |||||| ||||| | || || ||||| || || Sbjct 5127 GTCTTGACATTCTCAATGGTGTCAGAACCCTCGACCTCAAGAGTGATGGTCTTACCAGTG 5068 Query 45314 AGAGTCTTCACAAAGATTTGCAT 45336 || ||||| || ||||||||||| Sbjct 5067 AGGGTCTTAACGAAGATTTGCAT 5045 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGT 45193 || || ||| |||||| || |||||||| ||| || ||| | || || ||||| Sbjct 5475 TGGAGGGTGGACTCCTTTTGGATGTTGTAATCGGAGAGAGTACGACCATCCTCAAGTTGC 5416 Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253 || ||||| || || | || |||||||| || || | |||||||||||| || || Sbjct 5415 TTGCCGGCAAAGATGAGACGTTGTTGGTCAGGTGGGATACCCTCCTTGTCTTGGATCTTG 5356 Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313 ||| || | | | | || ||| || ||||| | ||| || ||||| || || Sbjct 5355 GTCTTGACGTTCTCGATAGTATCGGAACCTTCGACCTCAAGGGTGATGGTCTTACCAGTG 5296 Query 45314 AGAGTCTTCACAAAGATTTGCAT 45336 || ||||| || ||||||||||| Sbjct 5295 AGGGTCTTGACGAAGATTTGCAT 5273 >seq60 Length=27343 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || |||||| || ||||||||||| || |||| | || || Sbjct 11533 ACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAGTCCGAAAGGGTGCGACCATCCTCA 11592 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 ||||| || |||||||| || | || ||||||||||| || | |||||||||||| Sbjct 11593 AGTTGCTTACCGGCGAAGATAAGACGTTGTTGGTCGGGGGGGATACCCTCCTTGTCTTGG 11652 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| ||||| ||||| | || || ||||| Sbjct 11653 ATCTTGGCCTTGACGTTCTCGATGGTGTCAGAGCCCTCGACCTCGAGTGTGATGGTCTTT 11712 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || |||| ||||| || ||||| |||||| Sbjct 11713 CCTGTCAATGTCTTAACGAAGATCTGCATG 11742 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395010765951022