Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq232 307 1e-78 seq2491 170 2e-37 seq2141 116 4e-21 seq915 105 6e-18 >seq232 Length=384298 Score = 307 bits (340), Expect = 1e-78 Identities = 606/883 (69%), Gaps = 30/883 (3%) Strand=Plus/Minus Query 13913 TTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTT 13972 |||||||| || ||| | |||||||||||| |||||||| || | ||||| || | Sbjct 339490 TTTTGATACTCTGCAACACGTTTTTCAAAGAAATTAGTTTTTCCCTGAAGTGAAATCATA 339431 Query 13973 TCCATAAAATCAAATGGATTTGTTGA--CATAAACACTTTATCACAACCTAGTTCTAATA 14030 ||||| ||||| |||||||||| ||| | ||||||| | |||| || | ||||| || Sbjct 339430 TCCATGAAATCGAATGGATTTGCTGATCCGTAAACACGCT--CACAGCCCAATTCTACTA 339373 Query 14031 GTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 14090 ||||||||| |||| |||||| | ||| || | ||| | | || |||||||| |||| Sbjct 339372 ATAATCTATCGGCAACGAACTCTAAATACTGTGTCATAAGACCAGCGTTCATACCAATTA 339313 Query 14091 GTTTTACAGGAATTATATTG-GTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATA 14149 |||| |||| | ||| || | ||||| | |||| ||| | ||| ||| ||| Sbjct 339312 AACTTACCGGAAG-AGATTCTGTGATAAATTGTCTTTCGATATCTAAAGCATCGACAATA 339254 Query 14150 ATAATCGTAATAATTTCATTAGAAGGAGGATATTTT--AGATGTTTAAA----AATTAAA 14203 || |||| | || || | | | | ||| | ||| | | | | || Sbjct 339253 ATTTCTTTAATTCTATCTTTTG--GCACTTTGTTTACCAAATGGTGATTGTGCAGGTGAA 339196 Query 14204 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 14263 | ||||||||||||||| | || || || | | ||| | ||| || || |||||||| Sbjct 339195 C-CGCAAAATCACAATGTACACCTTCGTCACGAGAAATCAATTCATTAGAGAATGTTAAA 339137 Query 14264 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAAT 14323 |||||||| || || |||||||| |||||| | |||| | ||| | ||| || || || Sbjct 339136 CCTGGCATTAAACCACGTTTTTTCAACCAATAAATTGAACAGAAAGCTCCCGAGAAAAAG 339077 Query 14324 ATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGAT 14383 ||||| |||||||||||||| || |||| || ||| |||| || | || | Sbjct 339076 ATTCCTTCAACTGCAGCAAAAGCAATTAGTCTTTCAGCAAATGAATCAGATTCG------ 339023 Query 14384 ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTA 14443 ||||||||| ||||||||| | |||||| ||||| | | ||| | ||||||| Sbjct 339022 ATCCATTTTAAAGCCCATTCTGCTTTTTTCTTAATTGCAGGAAAAACTTCTAAAGCATTA 338963 Query 14444 AATAA--ATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACA 14501 || || || | |||| || || || | | || |||||||| | ||| ||| Sbjct 338962 AACAACTCTGATTTTTCTGCTTCGTCTTTTACA--TACGTATCAATTAATAAAGAATAAG 338905 Query 14502 TTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACC 14561 | ||| ||| || || ||||| ||||| ||||||||||| | | ||||| | Sbjct 338904 TCTCACTGTGAATATTCTCCATCATGATCTGGAAACCATAAAAGAACTTTGCTTCGGCGT 338845 Query 14562 ATTGTACCTC-TGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCT 14620 |||| ||||| | | ||||| | || |||| |||||| || || || || || ||| Sbjct 338844 ATTGAACCTCGTTAACAAAAT-TCTCAGCCAGATTTTCGTTTACGATTCCGTCTGAAGCA 338786 Query 14621 GCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGT---TTTTTC 14677 ||||||||||| || || | |||||| || || | || || | | ||| || ||| Sbjct 338785 GCAAAAAATGCTAAAATATGTTTAATGAAATAACGTTCGTCGTCATTAAGTTTATTATTC 338726 Query 14678 CAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCT 14737 ||||| | |||||||| | | ||| | ||| || | ||||| |||||||| | | Sbjct 338725 CAATCTGTTAAATCCTGATGTAAATCGATTTCTTCGGCAGTCCAGAAACTAGCTTCCATT 338666 Query 14738 TTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAA 14780 ||||||||| | |||| || || | || | |||||||||| Sbjct 338665 TTTTTATACCATTCCCAAATATCATGATGTTTGATAGGAAAAA 338623 >seq2491 Length=10632 Score = 170 bits (188), Expect = 2e-37 Identities = 574/883 (65%), Gaps = 18/883 (2%) Strand=Plus/Minus Query 13911 TTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATAT 13970 |||||||||| |||| || | ||| |||||||| || ||||| |||| ||| || || Sbjct 4865 TTTTTTGATAATCACCCACACGTTTCTCAAAGAAATTGGTTTTGCCTTGCAGGGAGATCA 4806 Query 13971 TTTCCATAAAATCAAATGGATTTGTTGACATAA-ACACTTTATCACAACCTAGTTCTAAT 14029 | |||||||||||||| ||||| || | ||| | | | ||| | |||| ||||| Sbjct 4805 TCTCCATAAAATCAAACGGATTGGTGG-CATGATATATTTTGGTATAACCCAGTTCCTGC 4747 Query 14030 AGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATT 14089 || |||| || |||| ||||||||||| || ||||| | | |||||| || || Sbjct 4746 AGCCATCTGTCTGCAACAAACTCAATATACTGTGACATCAGTTTTGCATTCATCCCGATC 4687 Query 14090 AGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATA 14149 || || || | || || | |||||| ||||| || || || ||| ||| Sbjct 4686 AGGGCAACCGGCAAGGCATCTGTAATAAATTCCTTTTCGATTTCTACCGCGTCGCGGATA 4627 Query 14150 ATAATCGTAATAATTTCATTAGAAGGAGGATATTTT--AGATGTTTAAAAATTAAACACG 14207 || || | ||| | | || |||||| || |||| ||| | || | Sbjct 4626 ATTCCATGAACGACTTCCT--GGCTCAGTTTATTTTTGAGCATTTTATAAAGCAGGCAGG 4569 Query 14208 CAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTG 14267 |||| |||||||| | ||||||||||| ||| | || || ||| |||| |||| Sbjct 4568 CAAATTCACAATGCATCCCCTCATCTCTGGAAATCAACTCATTACTAAAGGTTAGCCCTG 4509 Query 14268 GCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTC 14327 |||||| |||| |||||| ||||| || || | | ||| ||| ||||| || | Sbjct 4508 GCATCAGGCCTCTTTTTTTCAACCAGAAGATCGAACAGAAGCTCCCGCTGAAGAAAATGC 4449 Query 14328 CCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCC 14387 | || ||||| || || || | || ||||| |||| ||| | | |||| Sbjct 4448 CTTCCACTGCGGCGAAAGCCACCAAACGTTCGGCAAA------ATTTCCGCCCTCAATCC 4395 Query 14388 ATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATA 14447 | |||||||| | |||||| || | | || | || || | |||| || | Sbjct 4394 AGCGCAATGCCCATTCTGCTTTTTTCTTTACACAAGGAACCGTCTCTACGGCATGGAACA 4335 Query 14448 AATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAG 14507 || || |||| || | | ||| || ||||| || || | ||| |||||| Sbjct 4334 GCCTGTCTTTTTCTTCAGGATCTTTAATATAGGTATCGATCAGCAGCGCATAGGTTTCAG 4275 Query 14508 AGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTA 14567 |||| ||||||||||| ||||| || ||||||||||| | ||||| | |||| Sbjct 4274 AGTGGATGTTTTCCATCATGATCTGGAAGCCATAAAAACAACGGGCTTCGGGAAGCTGTA 4215 Query 14568 C--CTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAA 14625 | | || | | || | | | || | |||||||| || || || ||||| || ||||| Sbjct 4214 CTTCGCTCA-TGAAGT-TCACTGCAAGGTTTTCATTTACAATGCCGTCACTTGCAGCAAA 4157 Query 14626 AAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTTTCCAAT-CGG 14684 ||| || | ||| | ||| || | |||| | | | | || | ||| | | Sbjct 4156 AAAAGCAAGTATATGAGAAATGAAATGACGCTCGCCTGTATTTAAGTTGTCCCAGTGCTT 4097 Query 14685 CTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTTTAT 14744 || || | |||||| || | ||| ||| | ||||| ||||| || || || |||| Sbjct 4096 CT-GGTCATCAGAAAGGTCAATTTCTTCAGCGGTCCAGAAACTTGCTTCACTCTTCTTAT 4038 Query 14745 ACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14787 ||||| |||| ||||| ||| ||||| |||| ||||| Sbjct 4037 ACATTTCCCAGATTTCAGGGTATTTAATAGGCAAAAGAACAAA 3995 >seq2141 Length=1138 Score = 116 bits (128), Expect = 4e-21 Identities = 120/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 14495 CTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCT 14554 ||||| | || || || || ||||| || || || || |||||||| |||||||||||| Sbjct 71 CTATAAGTCTCTGAATGAATATTTTCAATGGCAATTTGGAAACCATAGAAACATCTAGCT 130 Query 14555 TCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCA 14614 || | ||| |||||||| ||||| |||||| || ||||| || ||||||||| Sbjct 131 TCAGGGATTTGGACCTCTGACATGAATCTGGTGGCCAAGTTCTCATTGACGATACCATCA 190 Query 14615 CTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGT 14651 || || ||||| || ||||| | |||| ||||||||| Sbjct 191 CTGGCAGCAAAGAAAGCCAAGACGTTTGTAATAAAGT 227 >seq915 Length=13476 Score = 105 bits (116), Expect = 6e-18 Identities = 198/288 (69%), Gaps = 5/288 (2%) Strand=Plus/Minus Query 14201 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 14260 ||||| ||||| ||||| ||||| ||||| || | ||| || || ||||| || ||||| Sbjct 289 AAACAGGCAAAGTCACAGTGAAGACCCTCGTCACGACTGATGAGCTCGTTAGAGAATGTC 230 Query 14261 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGAT-CCGGAAAA 14319 ||||| |||||||| || || || || | |||||| || | ||| | | | || || Sbjct 229 AATCCGGGCATCAAGCCACGCTTCTTGAGCCAAAAGATGG-AGCAGAAGCTACCACTGAA 171 Query 14320 GAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTT 14379 || || ||||| || || ||||| || | || || || |||| || || ||| Sbjct 170 AAAGATACCCTCTACAGCTGCAAAGGCGACCAAACGCTCAGCAAATGAC---TTGGAGTT 114 Query 14380 CGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGC 14439 | |||||| | ||||||| |||| || || || | | | || || || || || Sbjct 113 GGTAATCCATCTCATAGCCCACTCAGCCTTCTTCTTTACACATGGAATGGTCTCGATGGC 54 Query 14440 ATTAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAAT 14487 ||||||||||| | ||| | | || | | ||| || |||||||| Sbjct 53 ATTAAATAAATTCTTCTTTTTCTCAGGATTCTTAATATAAGTATCAAT 6 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482264915639760