Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq232 107 4e-18 seq1310 89.7 1e-12 >seq232 Length=384298 Score = 107 bits (118), Expect = 4e-18 Identities = 175/252 (69%), Gaps = 0/252 (0%) Strand=Plus/Minus Query 94791 TCCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTATCATAAATACCCTCAAT 94850 ||||||||| | || ||||| |||| | | || | |||||||||||||| ||||| Sbjct 340554 TCCTCCAGCTGACTGCGAGATTTTTGCGGTTTGTTTTAAGGTATCATAAATACCATCAAT 340495 Query 94851 GCTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTGGGGTGTGACTGTTCCACA 94910 |||||||| || | | || | ||| || || || | ||| ||| | ||||| Sbjct 340494 ACTATCATCCTGCATTGCAAGTAAGAAACAAGAAGACATTTGCGGTTTTGGAGTTCCTGC 340435 Query 94911 ATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGATCATATGTTTC 94970 |||||||| || || | ||||| ||||| | | | ||||| | || || ||||| Sbjct 340434 ATTAAACAACGTTGGCGTTGCATGCGTAAAGAACTTTTTAGACATTAAGTCGTAAGTTTC 340375 Query 94971 AATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGCCACACGCATAATCATGTCCTG 95030 ||| || ||||| | || | |||||| || |||| |||||||| | ||||| ||| Sbjct 340374 AATTACCGATTTTAAATCGTCTAAGTGAATACCAACAGAAACACGCATTAACATGTGCTG 340315 Query 95031 AGGGCGCTCAAC 95042 || ||||| || Sbjct 340314 TGGACGCTCTAC 340303 Score = 89.7 bits (98), Expect = 1e-12 Identities = 167/241 (69%), Gaps = 7/241 (3%) Strand=Plus/Plus Query 101822 TTGTTTAACGCTGCACAACACTTCCCCGCCATCAAGAAGAAGGAGCAG--TGGGCTATTA 101879 |||||||| ||| | || || || || || ||||| || ||||| |||||| | | Sbjct 338958 TTGTTTAATGCTTTAGAAGTTTTTCCTGCAATTAAGAAAAA--AGCAGAATGGGCTTTAA 339015 Query 101880 ATTGGATGCAAAGCAATAACGATTTGGCGGAACTAATTGTTGCCTTTGCTGCAGTTGAAG 101939 | ||||| || || ||||| | ||| | | |||| |||||||||||||||| Sbjct 339016 AATGGATCGAATCTGATTC--ATTTG-CTGAAAGACTAATTGCTTTTGCTGCAGTTGAAG 339072 Query 101940 GAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGGATCAAGAACAGGGGTATTTTGC 101999 ||||||| || || || ||| || |||| ||| | || || | ||| | ||| Sbjct 339073 GAATCTTTTTCTCGGGAGCTTTCTGTTCAATTTATTGGTTGAAAAAACGTGGTTTAATGC 339132 Query 102000 CTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGACGAAGGTCTTCATCGCGACTTTG 102059 | ||| | || | ||| ||||| || |||||| | ||||||||| | ||| | || |||| Sbjct 339133 CAGGTTTAACATTCTCTAATGAATTGATTTCTCGTGACGAAGGTGTACATTGTGATTTTG 339192 Query 102060 C 102060 | Sbjct 339193 C 339193 >seq1310 Length=146132 Score = 89.7 bits (98), Expect = 1e-12 Identities = 191/281 (68%), Gaps = 6/281 (2%) Strand=Plus/Plus Query 35522 AATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACCTTATG 35581 ||||| ||| |||||||| ||| || | || |||||| || | | | |||| Sbjct 105064 AATCCCGATTCCAGAAGGATTATTGTGTCTGCCTGGAATGTGGCAGAGATAGAACATATG 105123 Query 35582 GCTCTTCCTCCATGCCACATGACTGCT--CAATTTTATGTGGCTAATGGAGAATTGTCGT 35639 || ||||| || ||||| || || | || |||||||| ||| | ||| || || | Sbjct 105124 GCACTTCCACCCTGCCA--TGCCTTTTTCCAGTTTTATGTAGCTGACGGAAAACTGAGCT 105181 Query 35640 GCCAGTTGTATCAGCGAAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGCATCAT 35699 | ||| | ||||||||||| | |||| | |||| || || || || ||||| || | Sbjct 105182 GTCAGCTTTATCAGCGAAGTGCAGATATTTTTCTGGGGGTACCTTTTAACATTGCCTCCT 105241 Query 35700 ACTCTCTTCTGACTCATCTGATGGC-CAGTATGGTGGGTCTAAAACCGGGAGAGTTTATC 35758 | | | |||||| || | || ||| | | || || | ||||||| |||||| Sbjct 105242 ATGCCTTACTGACTATGATGGTTGCACAGGTTTG-CGGACTGGAGTCGGGAGATTTTATC 105300 Query 35759 CTCACTCTTGGTGACGCACACATTTATAATACCCACATTGA 35799 | || ||||| || || ||| ||||||||| ||| ||||| Sbjct 105301 CATACCCTTGGCGATGCCCACCTTTATAATAACCATATTGA 105341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989414329019810