Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_003309.1 Length=53373 Score E Sequences producing significant alignments: (Bits) Value seq3538 114 4e-21 >seq3538 Length=6141 Score = 114 bits (126), Expect = 4e-21 Identities = 333/508 (66%), Gaps = 16/508 (3%) Strand=Plus/Plus Query 33405 TCAGCTTCAGCGGGCGGGATATAGCCGAGCGGTTCCATCAGCCGATGATGGTTGTACCAG 33464 || ||||| || || | ||| ||| ||| ||||| || || ||| ||| |||||| Sbjct 5585 TCTGCTTCTGCCGGAAGAGTATGGCCCAGCCTTTCCAGCAATCGTCGATTGTTATACCAG 5644 Query 33465 GCGACCCATTCCAGCGTTGCCAGTTCGACGGATTCCCTCGTTTTCCAAGGGGCGCGC-CG 33523 | ||||| || || |||||||| || | | | ||||||| || | || Sbjct 5645 TCCACCCACGTGAGTGTGGCCAGTTCTACTTCTGCACGGTTTTTCCA----GCTCTTACG 5700 Query 33524 ATGAATCAGTTCCGTCTTGTACAGGCCGTTGATCGTTTCGGCCAGCGCATTGTCGTAGCT 33583 || || | |||| ||||| || || ||||| | || |||| ||| ||||| || Sbjct 5701 GTGTATTACCTCCGCTTTGTAAAGACCATTGATGCTCTCCGCCATCGCGTTGTCATACGA 5760 Query 33584 GTCGCCCCGGCTGCCGACTGAGGGCTCGATGCCGGCCTCAGCCAGCCGTTCGCTGTAG-C 33642 |||||| || || ||| | | | ||||| || ||||| | ||||| | Sbjct 5761 GTCGCCTGTACTTCCTGTTGATGCCAGTAATCCGGCTTCCTTAAGCCGCTGTGTGTAGGC 5820 Query 33643 GAATGCTGACGTATTGAGACCCCCTGTCGGAATGATGAATCAAAGTCCCGTCCTCGCCCG 33702 | | | || || ||||| || | || ||||| | |||| | || || Sbjct 5821 CAGCGAT-ACATACTGAGAACCTTTATCACTGTGATGGA--------CCGTGC-CGGACG 5870 Query 33703 GTTGGCGGGCGTACAGCGCTTGTTCAAGTGCATCCAGAACAAAGTCCGTGGTCATCGACG 33762 || | ||||| | | ||| || || ||||||||||| || || ||| ||| |||| Sbjct 5871 GTCGACGGGCCCATAACGCCTGCTCCAGTGCATCCAGCACGAATGTCGTTTCCATGGACG 5930 Query 33763 AGCTGACCCGCCAGCCAACAATACGGCGGGCGAACACGTCGATCACGAATGCCACGTACA 33822 | ||||||||| || || || | ||| ||||| || || | ||| ||||| || | Sbjct 5931 ATGAGACCCGCCACCCCACGATGTATCCGGCAAACACATCAATGATGAACGCCACATAGA 5990 Query 33823 GCCAGCCTTGCCATGTCGAGACATACGTAAAATCCGACACCCAGAGCTGATTCGGTCGGT 33882 |||| |||||||| ||| || |||||||| | |||||| ||||| | ||||| | Sbjct 5991 CGAAGCCCTGCCATGTGCTGACGTAAGTAAAATCAGCCACCCACAGCTGGTCAGGTCGTT 6050 Query 33883 CAGCCTTGAACTGCCGGTTGACTCGGTC 33910 | ||| |||||| ||||| || ||||| Sbjct 6051 CTGCCACGAACTGACGGTTTACGCGGTC 6078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 170644878299140