Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_003315.1 Length=31508 Score E Sequences producing significant alignments: (Bits) Value seq12990 111 3e-20 seq11148 98.7 2e-16 seq5799 93.3 9e-15 seq4414 80.6 5e-11 >seq12990 Length=420 Score = 111 bits (122), Expect = 3e-20 Identities = 72/79 (91%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 356 ATTGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTCTAC 415 |||||||||||||| ||||||||||||| ||||||| ||||||||||| ||||||||| Sbjct 194 ATTGGTGGGTCGTGCAGGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTAC 253 Query 416 CGACTGAGCTAACGACCCA 434 | ||||||||||||||||| Sbjct 254 CAACTGAGCTAACGACCCA 272 >seq11148 Length=484 Score = 98.7 bits (108), Expect = 2e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 358 TGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTCTACCG 417 ||||||| ||||| ||||||||||| |||||||| ||||||||||| |||||||||| Sbjct 263 TGGTGGGCCGTGATGGATTCGAACCATCGACCAAAAGATTAAAAGTCTTCTGCTCTACCA 204 Query 418 ACTGAGCTAACGACCCA 434 |||||||||||| |||| Sbjct 203 ACTGAGCTAACGGCCCA 187 >seq5799 Length=219 Score = 93.3 bits (102), Expect = 9e-15 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 358 TGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTCTACCG 417 |||||||||||| |||||||||||| ||||||| | ||||||| | |||||||||| Sbjct 100 TGGTGGGTCGTGTGGGATTCGAACCTACGACCAATTGGTTAAAAGCCAACTGCTCTACCA 159 Query 418 ACTGAGCTAACGACCCAATTA 438 | |||||||||||||||| || Sbjct 160 AGTGAGCTAACGACCCAAATA 180 >seq4414 Length=266 Score = 80.6 bits (88), Expect = 5e-11 Identities = 61/72 (85%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 357 TTGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTCTACC 416 |||||||| || ||||||||||||||| |||| | |||||| |||| |||||||||| Sbjct 135 TTGGTGGGCTGTCAAGGATTCGAACCTTGGACCTATTGATTAAGAGTCAACTGCTCTACC 194 Query 417 GACTGAGCTAAC 428 ||||||||||| Sbjct 195 AACTGAGCTAAC 206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 100687997001480