Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq2491 104 2e-17 seq1158 82.4 8e-11 >seq2491 Length=10632 Score = 104 bits (114), Expect = 2e-17 Identities = 337/519 (65%), Gaps = 12/519 (2%) Strand=Plus/Plus Query 52549 GTTCCGTGTGTGCGCAAAAAGGATGATTGGGCATTGAAATGGATCGAAAACGACAAAGCC 52608 ||||| ||||| ||||| | || ||||||||| ||||| || || || Sbjct 4355 GTTCCTTGTGTAAAGAAAAAAGCAGAATGGGCATTGCGCTGGATTGAGGGCGGAAA---- 4410 Query 52609 ACTTTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTGTGtttttttCGGGTAGT 52668 ||||||||||||| |||| || || || ||||||||| | || || || || Sbjct 4411 --TTTTGCCGAACGTTTGGTGGCTTTCGCCGCAGTGGAAGGCATTTTCTTCAGCGGGAGC 4468 Query 52669 TTTGCGGCAATATTTTACATCAAAACCTTGGGCATAATGCCCGGCCTCACGTTTAGCAAC 52728 || | || || | | |||| ||| | ||||| || || || ||||| || Sbjct 4469 TTCTGTTCGATCTTCTGGTTGAAAAAAAGAGGCCTGATGCCAGGGCTAACCTTTAGTAAT 4528 Query 52729 GAGTTGATATCGCGCGACGAAGGAATGCACACAGATTTTGCGTGTTTGTATTATAATACG 52788 |||||||| || | || || || ||||| || ||||| || || |||||| | | Sbjct 4529 GAGTTGATTTCCAGAGATGAGGGGATGCATTGTGAATTTGCCTGCCTGCTTTATAAAATG 4588 Query 52789 CGCGTTAAAGAAAAATTGTCATATGAAAAAATTCTAGACATGTTTAAAGAGGCCGTCGAC 52848 | | ||| | ||| || | ||| ||| | || | || || || || Sbjct 4589 CTC---AAAAATAAACTGAGCCAGGAAGTCGTTCATGGAATTATCCGCGACGCGGTAGAA 4645 Query 52849 ATTGAAAAAGAGTTTTTTACGGACGCTTTACCCGTATCATTGTTGGGCATGAACGCGACC 52908 || ||||| || ||| |||| || || || || || | || | || ||||| || | Sbjct 4646 ATCGAAAAGGAATTTATTACAGATGCCTTGCCGGTTGCCCTGATCGGGATGAATGCAAAA 4705 Query 52909 ATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTGTTGATGCAGCTCGGTCA-GCC 52967 |||||| |||| || ||||||||||| |||||| | || | | || ||| | || Sbjct 4706 CTGATGTCACAGTATATTGAGTTTGTTGCAGACAGATGGCTGCAGGAACTGGGTTATACC 4765 Query 52968 GAAATACTATAATGCGCGTAACCCCTTTTCGTTTATGAACAACATATCGCTCGAGGGCAA 53027 ||||| ||| |||| || || ||| |||||| | | || || || | ||||| Sbjct 4766 AAAATA-TATCATGCCACCAATCCGTTTGATTTTATGGAGATGATCTCCCTGCAAGGCAA 4824 Query 53028 AACAAACTTTTTCGAGAGACGTGTGGGCGAGTA-CAAAA 53065 ||| || || || |||| ||||||||| || || ||||| Sbjct 4825 AACCAATTTCTTTGAGAAACGTGTGGGTGATTATCAAAA 4863 >seq1158 Length=25781 Score = 82.4 bits (90), Expect = 8e-11 Identities = 159/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||||| || ||||| ||||||||||| |||||| Sbjct 9253 CCACCACGGAGACGGAGCACCAAGTGAAGGGTTGACTCCTTTTGAATGTTGTAATCGGAG 9312 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| || ||||| || || || || |||| |||||||| |||||||| || Sbjct 9313 AGAGTGCGACCATCCTCGAGTTGCTTGCCGGCGAAGATGAGACGTTGTTGATCGGGTGGG 9372 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGT-TTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || || || || ||| | || || || | | || | || |||| ||| || Sbjct 9373 ATACCCTCCTTATC-TTGAATCTTGGTCTTGACGTTCTCGATGGTATCGGAACCCTCGAC 9431 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 ||| | ||| | ||||| || || | || || ||||| || |||||| || Sbjct 9432 CTCCAAGGTAATTGTCTTACCAGTGAGGGTCTTGACGAAAATCTGCATACCT 9483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495981020894400