Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq232 289 3e-73 seq2491 163 3e-35 seq915 113 4e-20 seq2141 107 2e-18 >seq232 Length=384298 Score = 289 bits (320), Expect = 3e-73 Identities = 602/883 (68%), Gaps = 30/883 (3%) Strand=Plus/Minus Query 13581 TTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTT 13640 |||||||| || ||| | |||||||||||| |||||||| || | ||||| || | Sbjct 339490 TTTTGATACTCTGCAACACGTTTTTCAAAGAAATTAGTTTTTCCCTGAAGTGAAATCATA 339431 Query 13641 TCCATAAAATCAAATGGATTTATTGA--CATAAACACTTTATCACAACCTAGTTCTAATA 13698 ||||| ||||| ||||||||| ||| | ||||||| | |||| || | ||||| || Sbjct 339430 TCCATGAAATCGAATGGATTTGCTGATCCGTAAACACGCT--CACAGCCCAATTCTACTA 339373 Query 13699 GTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 13758 ||||||||| |||| ||||| | ||| || | ||| | | || |||||||| |||| Sbjct 339372 ATAATCTATCGGCAACGAACTCTAAATACTGTGTCATAAGACCAGCGTTCATACCAATTA 339313 Query 13759 GTTTTACAGGAATTATATTG-GTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATA 13817 |||| |||| | ||| || | ||||| | |||| ||| | ||| || ||| Sbjct 339312 AACTTACCGGAAG-AGATTCTGTGATAAATTGTCTTTCGATATCTAAAGCATCGACAATA 339254 Query 13818 ATAATTGTAATAATCTCATTAGAAGGAGGATATTTT--AGATGTTTAAA----AATTAAA 13871 || | |||| | || || | | | | ||| | ||| | | | | || Sbjct 339253 ATTTCTTTAATTCTATCTTTTG--GCACTTTGTTTACCAAATGGTGATTGTGCAGGTGAA 339196 Query 13872 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13931 | ||||||||||||||| | || || || | | ||| | ||| || || |||||||| Sbjct 339195 C-CGCAAAATCACAATGTACACCTTCGTCACGAGAAATCAATTCATTAGAGAATGTTAAA 339137 Query 13932 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAAT 13991 |||||||| || || |||||||| |||||| | |||| | || | || || || || Sbjct 339136 CCTGGCATTAAACCACGTTTTTTCAACCAATAAATTGAACAGAAAGCTCCCGAGAAAAAG 339077 Query 13992 ATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGAT 14051 ||||| |||||||||||||| || |||| || ||| |||| || | || | Sbjct 339076 ATTCCTTCAACTGCAGCAAAAGCAATTAGTCTTTCAGCAAATGAATCAGATTCG------ 339023 Query 14052 ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTA 14111 ||||||||| ||||||||| | |||||| ||||| | | ||| | ||||||| Sbjct 339022 ATCCATTTTAAAGCCCATTCTGCTTTTTTCTTAATTGCAGGAAAAACTTCTAAAGCATTA 338963 Query 14112 AATAAATAT--TCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACA 14169 || || | | | |||| || || || | | || |||||||| | ||| ||| Sbjct 338962 AACAACTCTGATTTTTCTGCTTCGTCTTTTACA--TACGTATCAATTAATAAAGAATAAG 338905 Query 14170 TTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACC 14229 | ||| ||| || || ||||| ||||| |||||||||||| | | ||||| | Sbjct 338904 TCTCACTGTGAATATTCTCCATCATGATCTGGAAACCATAAAAGAACTTTGCTTCGGCGT 338845 Query 14230 ATTGTACTTC-CGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCT 14288 |||| || || | ||||| | || |||| |||||| || || || || || ||| Sbjct 338844 ATTGAACCTCGTTAACAAAAT-TCTCAGCCAGATTTTCGTTTACGATTCCGTCTGAAGCA 338786 Query 14289 GCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGT---TTTTTC 14345 ||||||||||| || || | |||||| || || | || || | || ||| || ||| Sbjct 338785 GCAAAAAATGCTAAAATATGTTTAATGAAATAACGTTCGTCGTCATTAAGTTTATTATTC 338726 Query 14346 CAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCT 14405 ||||| | |||||||| | | ||| | ||| || | ||||| |||||||| | | Sbjct 338725 CAATCTGTTAAATCCTGATGTAAATCGATTTCTTCGGCAGTCCAGAAACTAGCTTCCATT 338666 Query 14406 TTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAA 14448 ||||||||| | |||| || || | || | |||||||||| Sbjct 338665 TTTTTATACCATTCCCAAATATCATGATGTTTGATAGGAAAAA 338623 >seq2491 Length=10632 Score = 163 bits (180), Expect = 3e-35 Identities = 569/881 (65%), Gaps = 14/881 (2%) Strand=Plus/Minus Query 13579 TTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATAT 13638 |||||||||| |||| || | ||| |||||||| || ||||| |||| ||| || || Sbjct 4865 TTTTTTGATAATCACCCACACGTTTCTCAAAGAAATTGGTTTTGCCTTGCAGGGAGATCA 4806 Query 13639 TTTCCATAAAATCAAATGGATTTATTGACAT-AAACACTTTATCACAACCTAGTTCTAAT 13697 | |||||||||||||| ||| || || ||| | | | ||| | |||| ||||| Sbjct 4805 TCTCCATAAAATCAAACGGA-TTGGTGGCATGATATATTTTGGTATAACCCAGTTCCTGC 4747 Query 13698 AGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATT 13757 || |||| || |||| |||||||||||| || ||||| | | |||||| || || Sbjct 4746 AGCCATCTGTCTGCAACAAACTCAATATACTGTGACATCAGTTTTGCATTCATCCCGATC 4687 Query 13758 AGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATA 13817 || || || | || || | |||||| ||||| || || || || ||| Sbjct 4686 AGGGCAACCGGCAAGGCATCTGTAATAAATTCCTTTTCGATTTCTACCGCGTCGCGGATA 4627 Query 13818 ATAATTGTAATAATCTCATTAGAAGGAGGATATTTT--AGATGTTTAAAAATTAAACACG 13875 || || | || | | || |||||| || |||| ||| | || | Sbjct 4626 ATTCCATGAACGACTTCCT--GGCTCAGTTTATTTTTGAGCATTTTATAAAGCAGGCAGG 4569 Query 13876 CAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTG 13935 |||| |||||||| | ||||||||||| ||| | || || ||| |||| |||| Sbjct 4568 CAAATTCACAATGCATCCCCTCATCTCTGGAAATCAACTCATTACTAAAGGTTAGCCCTG 4509 Query 13936 GCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTC 13995 |||||| |||| |||||| ||||| || || | | || |||| ||||| || | Sbjct 4508 GCATCAGGCCTCTTTTTTTCAACCAGAAGATCGAACAGAAGCTCCCGCTGAAGAAAATGC 4449 Query 13996 CCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCC 14055 | || ||||| || || || | || ||||| |||| ||| | | |||| Sbjct 4448 CTTCCACTGCGGCGAAAGCCACCAAACGTTCGGCAAA------ATTTCCGCCCTCAATCC 4395 Query 14056 ATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATA 14115 | |||||||| | |||||| || | | || | || || | |||| || | Sbjct 4394 AGCGCAATGCCCATTCTGCTTTTTTCTTTACACAAGGAACCGTCTCTACGGCATGGAACA 4335 Query 14116 AATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAG 14175 || || |||| || | | ||| || ||||| || || | ||| |||||| Sbjct 4334 GCCTGTCTTTTTCTTCAGGATCTTTAATATAGGTATCGATCAGCAGCGCATAGGTTTCAG 4275 Query 14176 AGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTA 14235 |||| ||||||||||| ||||| || |||||||| || | ||||| | |||| Sbjct 4274 AGTGGATGTTTTCCATCATGATCTGGAAGCCATAAAAACAACGGGCTTCGGGAAGCTGTA 4215 Query 14236 CTTC-CGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAA 14294 |||| | | || | | | || | |||||||| || || || ||||| || |||||| Sbjct 4214 CTTCGCTCATGAAGT-TCACTGCAAGGTTTTCATTTACAATGCCGTCACTTGCAGCAAAA 4156 Query 14295 AATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGAT 14354 || || | ||| | ||| || | |||| | | || | || | ||| | Sbjct 4155 AAAGCAAGTATATGAGAAATGAAATGACGCTCGCCTGTATTTAAGTTGTCCCAGTGCTTC 4096 Query 14355 AAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATAC 14414 || | |||||| || | ||| ||| | ||||| ||||| || || || |||||| Sbjct 4095 TGGTCATCAGAAAGGTCAATTTCTTCAGCGGTCCAGAAACTTGCTTCACTCTTCTTATAC 4036 Query 14415 ATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14455 ||| |||| ||||| ||| ||||| |||| ||||| Sbjct 4035 ATTTCCCAGATTTCAGGGTATTTAATAGGCAAAAGAACAAA 3995 >seq915 Length=13476 Score = 113 bits (124), Expect = 4e-20 Identities = 202/290 (70%), Gaps = 9/290 (3%) Strand=Plus/Minus Query 13869 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13928 ||||| ||||| ||||| ||||| ||||| || | ||| || || ||||| || ||||| Sbjct 289 AAACAGGCAAAGTCACAGTGAAGACCCTCGTCACGACTGATGAGCTCGTTAGAGAATGTC 230 Query 13929 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATG--ACC-CGGAA 13985 ||||| |||||||| || || || || | |||||| || | |||| | | ||| | ||| Sbjct 229 AATCCGGGCATCAAGCCACGCTTCTTGAGCCAAAAGATGG-AGCAGAAGCTACCACTGAA 171 Query 13986 AAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTG 14045 || ||| ||||| || || ||||| || | || || || |||| || || | Sbjct 170 AAAGATA--CCCTCTACAGCTGCAAAGGCGACCAAACGCTCAGCAAATGAC---TTGGAG 116 Query 14046 TTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATA 14105 || | |||||| | ||||||| |||| || || || | | | || || || || Sbjct 115 TTGGTAATCCATCTCATAGCCCACTCAGCCTTCTTCTTTACACATGGAATGGTCTCGATG 56 Query 14106 GCATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAAT 14155 ||||||||||||| | ||| | | || | | ||| || |||||||| Sbjct 55 GCATTAAATAAATTCTTCTTTTTCTCAGGATTCTTAATATAAGTATCAAT 6 >seq2141 Length=1138 Score = 107 bits (118), Expect = 2e-18 Identities = 179/257 (70%), Gaps = 9/257 (4%) Strand=Plus/Plus Query 14163 CTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCT 14222 ||||| | || || || || ||||| || || || || |||||||| || ||||||||| Sbjct 71 CTATAAGTCTCTGAATGAATATTTTCAATGGCAATTTGGAAACCATAGAAACATCTAGCT 130 Query 14223 TCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCA 14282 || | ||| || || || ||||| |||||| || ||||| || ||||||||| Sbjct 131 TCAGGGATTTGGACCTCTGACATGAATCTGGTGGCCAAGTTCTCATTGACGATACCATCA 190 Query 14283 CTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTG---TTGAGT 14339 || || ||||| || ||||| | |||| |||||||| || ||||||| ||||| Sbjct 191 CTGGCAGCAAAGAAAGCCAAGACGTTTGTAATAAAG---TGACGTTCATTGTCATTGAGC 247 Query 14340 TTTTT---CCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTA 14396 || || ||| ||| | || | | ||| |||| || || | |||||||| || Sbjct 248 TTGTTCTCCCATTCGTTGATGTCACTTGCAAGGTCTATCTCCTCTGCAGTCCAAAAGCTT 307 Query 14397 GCGACAGCTTTTTTATA 14413 || |||| || || || Sbjct 308 GCTTCAGCCTTCTTGTA 324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479647753498800