Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq232 298 5e-76 seq2491 172 5e-38 seq2141 116 4e-21 >seq232 Length=384298 Score = 298 bits (330), Expect = 5e-76 Identities = 604/883 (68%), Gaps = 30/883 (3%) Strand=Plus/Minus Query 13369 ttttGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTT 13428 |||||||| || ||| | ||||||||| || |||||||| || | ||||| || | Sbjct 339490 TTTTGATACTCTGCAACACGTTTTTCAAAGAAATTAGTTTTTCCCTGAAGTGAAATCATA 339431 Query 13429 TCCATAAAATCGAATGGATTTGTTGA--CATAAACACTTTATCACAACCTAGTTCTAATA 13486 ||||| |||||||||||||||| ||| | ||||||| | |||| || | ||||| || Sbjct 339430 TCCATGAAATCGAATGGATTTGCTGATCCGTAAACACGCT--CACAGCCCAATTCTACTA 339373 Query 13487 ATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 13546 |||||||||| |||| ||||| | ||| || | ||| | | || |||||||| |||| Sbjct 339372 ATAATCTATCGGCAACGAACTCTAAATACTGTGTCATAAGACCAGCGTTCATACCAATTA 339313 Query 13547 GTTTTACAGGAATTATATTA-GTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATA 13605 |||| |||| | ||| || | ||||| | |||| ||| | ||| ||| ||| Sbjct 339312 AACTTACCGGAAG-AGATTCTGTGATAAATTGTCTTTCGATATCTAAAGCATCGACAATA 339254 Query 13606 ATAATCTTAATAATGTCATTAGAAGGAGGATATTTT--AGATGTTTAAA----AATTAAA 13659 || ||||| | || || | | | | ||| | ||| | | | | || Sbjct 339253 ATTTCTTTAATTCTATCTTTTG--GCACTTTGTTTACCAAATGGTGATTGTGCAGGTGAA 339196 Query 13660 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13719 | ||||||||||||||| | || || || | | ||| | ||| || || |||||||| Sbjct 339195 C-CGCAAAATCACAATGTACACCTTCGTCACGAGAAATCAATTCATTAGAGAATGTTAAA 339137 Query 13720 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAAT 13779 |||||||| || || |||||||| |||||| | |||| | ||| | ||| || || || Sbjct 339136 CCTGGCATTAAACCACGTTTTTTCAACCAATAAATTGAACAGAAAGCTCCCGAGAAAAAG 339077 Query 13780 ATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGAT 13839 ||||| |||||||||||||| || ||||||| ||| |||| || | || | Sbjct 339076 ATTCCTTCAACTGCAGCAAAAGCAATTAGTCTTTCAGCAAATGAATCAGATTCG------ 339023 Query 13840 ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTG 13899 ||||||||| ||||||||| | |||||| ||||| | | ||| | ||||| Sbjct 339022 ATCCATTTTAAAGCCCATTCTGCTTTTTTCTTAATTGCAGGAAAAACTTCTAAAGCATTA 338963 Query 13900 AATAA--ATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACA 13957 || || || | |||| || || || | | || |||||||| | ||| ||| Sbjct 338962 AACAACTCTGATTTTTCTGCTTCGTCTTTTACA--TACGTATCAATTAATAAAGAATAAG 338905 Query 13958 TTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACC 14017 | ||| ||| || || || || ||||| ||||||||||| | | ||||| | Sbjct 338904 TCTCACTGTGAATATTCTCCATCATGATCTGGAAACCATAAAAGAACTTTGCTTCGGCGT 338845 Query 14018 ATTGTACCTC-CGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCT 14076 |||| ||||| | ||||| | || |||| ||||| || || || || || ||| Sbjct 338844 ATTGAACCTCGTTAACAAAAT-TCTCAGCCAGATTTTCGTTTACGATTCCGTCTGAAGCA 338786 Query 14077 GCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGT---TTTTTC 14133 ||||||||||| || || | |||||| || || | || || | || ||| || ||| Sbjct 338785 GCAAAAAATGCTAAAATATGTTTAATGAAATAACGTTCGTCGTCATTAAGTTTATTATTC 338726 Query 14134 CAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCT 14193 ||||| | |||||||| | | ||| | ||| || | ||||| |||||||| | | Sbjct 338725 CAATCTGTTAAATCCTGATGTAAATCGATTTCTTCGGCAGTCCAGAAACTAGCTTCCATT 338666 Query 14194 TTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAA 14236 ||||||||| | |||| || || | || | |||||||||| Sbjct 338665 TTTTTATACCATTCCCAAATATCATGATGTTTGATAGGAAAAA 338623 >seq2491 Length=10632 Score = 172 bits (190), Expect = 5e-38 Identities = 573/882 (65%), Gaps = 16/882 (2%) Strand=Plus/Minus Query 13367 ttttttGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATAT 13426 |||||||||| |||| || | ||| ||||| || || ||||| |||| ||| || || Sbjct 4865 TTTTTTGATAATCACCCACACGTTTCTCAAAGAAATTGGTTTTGCCTTGCAGGGAGATCA 4806 Query 13427 TTTCCATAAAATCGAATGGATTTGTTGACAT-AAACACTTTATCACAACCTAGTTCTAAT 13485 | ||||||||||| || ||| ||| || ||| | | | ||| | |||| ||||| Sbjct 4805 TCTCCATAAAATCAAACGGA-TTGGTGGCATGATATATTTTGGTATAACCCAGTTCCTGC 4747 Query 13486 AATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATT 13545 | |||| || |||| |||||||||||| || ||||| | | |||||| || || Sbjct 4746 AGCCATCTGTCTGCAACAAACTCAATATACTGTGACATCAGTTTTGCATTCATCCCGATC 4687 Query 13546 AGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATA 13605 || || || | || || | |||||| ||||| || || || ||| ||| Sbjct 4686 AGGGCAACCGGCAAGGCATCTGTAATAAATTCCTTTTCGATTTCTACCGCGTCGCGGATA 4627 Query 13606 ATAATCTTAATAATGTCATTAGAAGGAGGATATTTT--AGATGTTTAAAAATTAAACACG 13663 || | || | || | | || |||||| || |||| ||| | || | Sbjct 4626 ATTCCATGAACGACTTCCT--GGCTCAGTTTATTTTTGAGCATTTTATAAAGCAGGCAGG 4569 Query 13664 CAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTG 13723 |||| |||||||| | ||||||||||| ||| | || || ||| |||| |||| Sbjct 4568 CAAATTCACAATGCATCCCCTCATCTCTGGAAATCAACTCATTACTAAAGGTTAGCCCTG 4509 Query 13724 GCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTC 13783 |||||| |||| |||||| ||||| || || | | ||| ||| ||||| || | Sbjct 4508 GCATCAGGCCTCTTTTTTTCAACCAGAAGATCGAACAGAAGCTCCCGCTGAAGAAAATGC 4449 Query 13784 CCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCC 13843 | || ||||| || || || | | ||||| |||| ||| | |||| Sbjct 4448 CTTCCACTGCGGCGAAAGCCACCAAACGTTCGGCAAA------ATTTCCGCCCTCAATCC 4395 Query 13844 ATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATA 13903 | |||||||| | |||||| || | | || | || || | |||| ||| | Sbjct 4394 AGCGCAATGCCCATTCTGCTTTTTTCTTTACACAAGGAACCGTCTCTACGGCATGGAACA 4335 Query 13904 AATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAG 13963 || || |||| || | | ||| || ||||| || || | ||| |||||| Sbjct 4334 GCCTGTCTTTTTCTTCAGGATCTTTAATATAGGTATCGATCAGCAGCGCATAGGTTTCAG 4275 Query 13964 AGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTA 14023 |||| |||||||| || ||||| || ||||||||||| | ||||| | |||| Sbjct 4274 AGTGGATGTTTTCCATCATGATCTGGAAGCCATAAAAACAACGGGCTTCGGGAAGCTGTA 4215 Query 14024 CCTC-CGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAA 14082 | || | | || | | |||| | ||||||||| ||||| || ||||| || |||||| Sbjct 4214 CTTCGCTCATGAAGT-TCACTGCAAGGTTTTCATTTACAATGCCGTCACTTGCAGCAAAA 4156 Query 14083 AATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAAT-CGGC 14141 || || | ||| | ||| || | |||| | | || | || | ||| | | | Sbjct 4155 AAAGCAAGTATATGAGAAATGAAATGACGCTCGCCTGTATTTAAGTTGTCCCAGTGCTTC 4096 Query 14142 TAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATA 14201 | || | |||||| || | ||| ||| | ||||| ||||| || || || ||||| Sbjct 4095 T-GGTCATCAGAAAGGTCAATTTCTTCAGCGGTCCAGAAACTTGCTTCACTCTTCTTATA 4037 Query 14202 CATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14243 |||| |||| ||||| ||| ||||| |||| ||||| Sbjct 4036 CATTTCCCAGATTTCAGGGTATTTAATAGGCAAAAGAACAAA 3995 >seq2141 Length=1138 Score = 116 bits (128), Expect = 4e-21 Identities = 181/257 (70%), Gaps = 9/257 (4%) Strand=Plus/Plus Query 13951 CTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCT 14010 ||||| | || || || || ||||| || || || || |||||||| |||||||||||| Sbjct 71 CTATAAGTCTCTGAATGAATATTTTCAATGGCAATTTGGAAACCATAGAAACATCTAGCT 130 Query 14011 TCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCA 14070 || | ||| ||||| || ||||| |||||||| ||||| || ||||||||| Sbjct 131 TCAGGGATTTGGACCTCTGACATGAATCTGGTGGCCAAGTTCTCATTGACGATACCATCA 190 Query 14071 CTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTG---TTGAGT 14127 || || ||||| || ||||| | |||| |||||||| || ||||||| ||||| Sbjct 191 CTGGCAGCAAAGAAAGCCAAGACGTTTGTAATAAAG---TGACGTTCATTGTCATTGAGC 247 Query 14128 TTTTT---CCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTA 14184 || || ||| ||| | || | | ||| |||| || || | |||||||| || Sbjct 248 TTGTTCTCCCATTCGTTGATGTCACTTGCAAGGTCTATCTCCTCTGCAGTCCAAAAGCTT 307 Query 14185 GCGACAGCTTTTTTATA 14201 || |||| || || || Sbjct 308 GCTTCAGCCTTCTTGTA 324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478508744058480