Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_004313.1 Length=40149 Score E Sequences producing significant alignments: (Bits) Value seq2271 190 5e-44 seq3933 93.3 1e-14 >seq2271 Length=37941 Score = 190 bits (210), Expect = 5e-44 Identities = 396/587 (67%), Gaps = 16/587 (3%) Strand=Plus/Plus Query 37390 CCAATTTCAGCAGGCGGCTGGTATTAGCGCCGGGCTTTCTGCGCGCTGGTATCCGCATAT 37449 |||||| | | || || ||||| || | | ||| | |||||||||||| |||||| Sbjct 6822 CCAATTCCGCCGCGCCGCCGGTATCAGTGAGGTGCTGGCCACGCGCTGGTATCTGCATAT 6881 Query 37450 TACGGCGGCAATGAGCGAATTCGGTATTACTGCACCACTGGATCAGGCCATGTTCATTGC 37509 || |||||||||| || || || || ||| ||| | ||||| ||||| || || Sbjct 6882 CACCGCGGCAATGAAAGAGTTTGGCATCGAACAACCGCTGCACCAGGCGATGTTTATCGC 6941 Query 37510 ACAAGTTGGGCATGAATCTGCTGGTTTTACCTCGCTGGTCGAGAGCTTCAACTACTCGGT 37569 || || |||||||| ||| | || |||||| |||| || | |||||||||| || Sbjct 6942 GCAGGTCGGGCATGAGTCTACCGGCTTTACCCGGCTGCAGGAAAACTTCAACTACAGCGT 7001 Query 37570 AGATGGGCTGATGAAAACCTTTGGTAAA---CGCCTGACGCCGTATCAGTGTGAAATGCT 37626 || |||||| | | ||| ||||| || | | |||| | | ||| Sbjct 7002 AGCAGGGCTGGCAGGTTTCGTCCGTACCGGGCGCCTAACTCAGGGTCAGGCTAACGCGCT 7061 Query 37627 GGGGCGTGTCGATGGT-AAGCA--------GGTGGCCCACCAGCCGCAAATAGCCAATCT 37677 ||| ||| | |||| || || | ||| | ||||| || ||||| || Sbjct 7062 GGGCCGTCGTGCTGGTGAACCATCGTTACCGCTGGAGCGCCAGCGTGCGATCGCCAACCT 7121 Query 37678 AGTTTACGGTGGCCGCATGGGTAACAAAGACGCCGGA--GATGGCTGGAAGTATCGCGGG 37735 || ||| | | ||||| ||||| | | | || || |||||| || | |||| Sbjct 7122 GGTGTACAGCAAAAGAATGGGGAACAACG--GTCCGACTGACGGCTGGTTTTACCTCGGG 7179 Query 37736 CGTGGGCTTATCCAGATTACCGGGCTGGAGAATTACACCAGATGCGGCGTTGCCCTGAAA 37795 || |||||||||||||| ||||||||| | || || | |||||| || |||||| Sbjct 7180 CGCGGGCTTATCCAGATCACCGGGCTGAACAACTATCGCGACTGCGGCAATGGCCTGAAG 7239 Query 37796 CTGGATCTGGTGGCGAATCCGGGACAGCTTGAACTGGATCGTCATGCCGCCCGTTCCGCA 37855 |||||||||| | | || | | ||| | | ||| | || ||||| ||| Sbjct 7240 GTGGATCTGGTTAAGCAGCCTGAGCTGCTGGCGCAGGACGAATACGCGGCCCGCAGCGCG 7299 Query 37856 GCGTGGTTTTTTGTGACTAGAGGGTGTCTGAAATACTCCGGCGACCTGGTGCGCGTTACG 37915 |||||||| || | || | ||| || |||| ||| ||||||||||||||||||| ||| Sbjct 7300 GCGTGGTTCTTCGCAACCAAAGGCTGCATGAAGTACACCGGCGACCTGGTGCGCGTCACG 7359 Query 37916 CAGATCATTAACGGAGGGCAGAACGGCATCGGTGACAGGCGAGAGCG 37962 |||||||| || || |||||||||||||||| ||| |||| | ||| Sbjct 7360 CAGATCATCAATGGTGGGCAGAACGGCATCGACGACCGGCGTGCGCG 7406 >seq3933 Length=4962 Score = 93.3 bits (102), Expect = 1e-14 Identities = 132/186 (71%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 28149 GTAGTTAGTGTTATCAGATATCACCAATAATTTATCGGGGATCATCTGCAGTCTTTTTAC 28208 |||| | |||||||||| || |||| || ||||| ||||| ||||| | ||||| Sbjct 1473 GTAGCTCTTGTTATCAGAGATAACCAGTAGCTTATCTTTCATCATTTGCAGGCGCTTTAC 1414 Query 28209 GTATATTTTATCATCAAAGCCAAAGACATAGATGCCATCACCATCGAACTGGTTGATGCT 28268 | | | || || | ||| ||||||| |||||||| ||||| || | | Sbjct 1413 ATGGGCTGTGTCGTCGTACAGAAACGCATAGATACCATCACCGTCGAAAGATTTAACCGT 1354 Query 28269 TATATCGACAAAAATAAGATCTCCGGGTTCAATTGTTGGTGCCATGCTGTCACCGCGCAC 28328 ||||| || || | ||||| || ||||| || ||| || |||||||||||||||||| Sbjct 1353 GATATCAACGAACAGCAGATCACCTGGTTCGATCGTTCCTGACATGCTGTCACCGCGCAC 1294 Query 28329 GTTAAT 28334 |||||| Sbjct 1293 GTTAAT 1288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128334802914724