Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_004348.1 Length=40679 Score E Sequences producing significant alignments: (Bits) Value seq2342 111 4e-20 seq2271 89.7 1e-13 seq7676 86.0 2e-12 >seq2342 Length=4104 Score = 111 bits (122), Expect = 4e-20 Identities = 63/64 (98%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 5137 CAATAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATATTGG 5196 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1788 CAAGAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATATTGG 1847 Query 5197 TTAC 5200 |||| Sbjct 1848 TTAC 1851 >seq2271 Length=37941 Score = 89.7 bits (98), Expect = 1e-13 Identities = 59/64 (92%), Gaps = 1/64 (2%) Strand=Plus/Minus Query 7959 TCTTTGGTTTCCAGCTCATCCAGCAGCGCCAGCATGGTGGCGGGGTTGGCTTGCGGCGAT 8018 ||||||| |||||||||||||||||||||||||| ||||||||| ||||| ||||||||| Sbjct 17488 TCTTTGGCTTCCAGCTCATCCAGCAGCGCCAGCACGGTGGCGGGTTTGGC-TGCGGCGAT 17430 Query 8019 AAAT 8022 | || Sbjct 17429 ATAT 17426 >seq7676 Length=607 Score = 86.0 bits (94), Expect = 2e-12 Identities = 50/52 (96%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 3044 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCAGTTAAA 3095 |||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 49 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTTCAA 100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130030533401244