Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_004629.1 Length=280334 Score E Sequences producing significant alignments: (Bits) Value seq1310 95.1 2e-14 seq287 89.7 9e-13 seq2192 87.8 3e-12 seq141 87.8 3e-12 seq7809 84.2 4e-11 >seq1310 Length=146132 Score = 95.1 bits (104), Expect = 2e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 272874 GTGGGCCCAGCAGGACTTGAACCTGCGACCAAGCGATTATGAGTCGCCTGCTCTAACCAA 272933 ||||||||||| || || ||||| |||||||| ||||||||||| || |||||||||| Sbjct 7353 GTGGGCCCAGCTGGGCTCGAACCAGCGACCAAAAGATTATGAGTCTTCTACTCTAACCAA 7412 Query 272934 CTGAGCTATAGGCCC 272948 ||||||||||||||| Sbjct 7413 CTGAGCTATAGGCCC 7427 >seq287 Length=224423 Score = 89.7 bits (98), Expect = 9e-13 Identities = 72/86 (84%), Gaps = 1/86 (1%) Strand=Plus/Plus Query 273265 TTAAAATGGTCGGAGTGGGGAGACTCGAACTCCCGACATCCTGCTCCCAAAGCAGGCGCG 273324 || |||||||||||| || |||| ||||||||||||| ||| ||||||| ||| ||| Sbjct 12963 TTGAAATGGTCGGAGCGGAGAGATTCGAACTCCCGACCCTCTGGTCCCAAACCAGATGCG 13022 Query 273325 CTACCA-ACTGCGCTACACTCCGTAT 273349 |||||| ||||||||| |||||||| Sbjct 13023 CTACCAGGCTGCGCTACGCTCCGTAT 13048 >seq2192 Length=12769 Score = 87.8 bits (96), Expect = 3e-12 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 272886 GGACTTGAACCTGCGACCAAGCGATTATGAGTCGCCTGCTCTAACCAACTGAGCTATAGG 272945 || || ||||| ||||||||| ||||||||||| ||| |||||||||||||||||||||| Sbjct 237 GGGCTCGAACCAGCGACCAAGAGATTATGAGTCTCCTACTCTAACCAACTGAGCTATAGG 178 Query 272946 CCC 272948 ||| Sbjct 177 CCC 175 >seq141 Length=235668 Score = 87.8 bits (96), Expect = 3e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 272871 ATGGTGGGCCCAGCAGGACTTGAACCTGCGACCAAGCGATTATGAGTCGCCTGCTCTAAC 272930 ||||||||||| | ||||| ||||| | |||||||| ||||||| |||| |||||||| Sbjct 213877 ATGGTGGGCCCGGAGGGACTCGAACCCCCAACCAAGCGGTTATGAGCCGCCGGCTCTAAC 213818 Query 272931 CAACTGAGCTATAGGCCC 272948 ||| ||||||| |||||| Sbjct 213817 CAATTGAGCTACAGGCCC 213800 >seq7809 Length=266 Score = 84.2 bits (92), Expect = 4e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 271755 GGACTCGAACCAGGGACCCAGTGATTAACAGTCACTTGCTCTACCGACTGAGCTAT 271810 ||||||||||| ||||||||||||||| |||||||||||||||| |||||||||| Sbjct 132 GGACTCGAACCCCGGACCCAGTGATTAAGAGTCACTTGCTCTACCAACTGAGCTAT 77 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 896790764227680