Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_004688.1 Length=110865 Score E Sequences producing significant alignments: (Bits) Value seq236 102 6e-17 seq1743 91.5 1e-13 seq8561 82.4 5e-11 >seq236 Length=280360 Score = 102 bits (112), Expect = 6e-17 Identities = 225/331 (68%), Gaps = 10/331 (3%) Strand=Plus/Plus Query 99582 GTGGCGCACGCCAGCCTCCTGCATCTGCCGGTATCGGTCGTCCATCTCT---ACGGTGAG 99638 || ||||||||| ||| ||||| ||||| ||||| |||||||| ||||| Sbjct 83377 GTTGCGCACGCCGACCTTGGACATCTTGCGGTAGCGGTCTTCCATCTCCTTGACGGT--- 83433 Query 99639 CCACCGCAGCGTTTTCACCGCCTCGTCAGCCTCTGTAACCACGGGCTGGAGAAGGTGGGG 99698 ||| ||||| | || |||| | | || || || |||||| ||| || || || Sbjct 83434 CCATTTCAGCGCTACGACGGCCTTCTTCGGATCGGTCACGACGGGCGTGAGCAGATGCGG 83493 Query 99699 GATACCGTTGTACGGGGTGAGCTCGACACAT-TTGGGGTCGATCATGATGAGTTTGACCC 99757 || |||| || | || || | ||| || || ||||||||||| || | | Sbjct 83494 AATGCCGTCATAGATCGACAGTTCCAG-CATCTTCGGATCGATCATGATCAGGCGGCACT 83552 Query 99758 GATCAGGGGTCGCCCGGTAGAGCAGCGAAACCAGCATTGAGTTGATGAAGCTGGACTTGC 99817 | || |||||| ||||| |||||||| | | ||| | ||||||| ||| || | Sbjct 83553 GTTCCGGGGTCATGCGGTAAAGCAGCGACAGGATCATGGTGTTGATGGCAACGGATTTAC 83612 Query 99818 CCGATCCGGTCGCGCCAGCCACCAGCAGATGCGGCATCTTAGCCAGGTTCAGGGA-GATG 99876 |||| ||||| | || || |||||||||||||||||||| |||| | || | || || Sbjct 83613 CCGAGCCGGTGGTACCTGCAACCAGCAGATGCGGCATCTTCGCCA-GATCGGCGATGACC 83671 Query 99877 TCCTTGCCCTCGACGTCCTTGCCCACTGCCA 99907 ||| ||| | || | |||||||| |||| Sbjct 83672 GCCTCGCCATTGATGGTCTTGCCCAGCGCCA 83702 >seq1743 Length=15357 Score = 91.5 bits (100), Expect = 1e-13 Identities = 202/294 (69%), Gaps = 13/294 (4%) Strand=Plus/Minus Query 99585 GCGCACGCC-AGCCTCCTG-CATCTGCCGGTATCGGTCGTCCATCTC---TACGGTGAGC 99639 ||||||||| ||| | || ||||| |||||| ||||| ||||| || ||| | | Sbjct 1147 GCGCACGCCCAGCTT--TGACATCTTCCGGTAACGGTCTTCCATTTCGCGTACCGC---C 1093 Query 99640 CACCGCAGCGTTTTCACCGCCTCGTCAGCCTCTGTAACCACGGGCTGGAGAAGGTGGGGG 99699 ||| ||||| | ||||||| | | || || || || || || ||||| || Sbjct 1092 CACTTCAGCGCCATGACCGCCTTTTTCGGGTCGGTCACAACAGGGGTAAGCAGGTGCGGA 1033 Query 99700 ATACCGTTGTACGGGGTGAGCTCGACACATTTGGGGTCGATCATGATGAGTTTGACCCGA 99759 ||||||| || | || || | ||||||||||| |||||| || | | Sbjct 1032 ATACCGTCATAGATCGACAGTTCTAGCATTTTGGGGTCGACCATGATCAGGCGGCACTCT 973 Query 99760 TCAGGGGTCGCCCGGTAGAGCAGCGAAACCAGCATTGAGTTGAT-GAAGCTGGACTTGCC 99818 || || ||| |||||| ||||| || | | ||| | |||||| | | | | ||||||| Sbjct 972 TCCGGCGTCAGCCGGTAAAGCAGTGACAGGATCATGGTGTTGATCGCAACCG-ACTTGCC 914 Query 99819 CGATCCGGTCGCGCCAGCCACCAGCAGATGCGGCATCTTAGCCAGGTTCAGGGA 99872 ||| || || | || || |||||||||||||||||||| || | |||||| || Sbjct 913 CGAACCCGTTGTACCGGCAACCAGCAGATGCGGCATCTTGGCGA-GTTCAGCGA 861 >seq8561 Length=961 Score = 82.4 bits (90), Expect = 5e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 99792 CATTGAGTTGATGAAGCTGGACTTGCCCGATCCGGTCGCGCCAGCCACCAGCAGATGCGG 99851 ||| ||||| | |||||| ||||| || || ||||| | || |||||||| |||||||| Sbjct 105 CATGGAGTTCACGAAGCTCGACTTACCGGAGCCGGTGGAACCTGCCACCAGGAGATGCGG 46 Query 99852 CATCTTAGCCAGGTTCAGGGAGATGTCCTTGCCCTCGACGTCCTT 99896 |||||| || |||||| | || | ||||| |||||||||| Sbjct 45 CATCTTCGCGAGGTTCGCGATGACGATGTTGCCGCCGACGTCCTT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354585360132252