Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq444 131 1e-25 seq1158 113 3e-20 >seq444 Length=38654 Score = 131 bits (144), Expect = 1e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| || ||||| ||||| || ||||| |||||||||||| ||| | | | || || Sbjct 5026 AACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCGGAGAGAGTACGACCATCCTC 4967 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||| ||||| || | || | |||||||||||| ||||||||| || ||||| Sbjct 4966 AAGTTGCTTGCCGGCAAAGATGAGACGTTGTTGGTCAGGTGGAATTCCCTCCTTGTCTTG 4907 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || ||| |||| || | || || |||||| | || || || |||||||| || || Sbjct 4906 GATCTTGGTCTTGACGTTCTCGATAGTATCGGAACCCTCGACCTCCAAGGTAATAGTCTT 4847 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 |||||||||||||| ||||| |||||||| Sbjct 4846 GCCTGTCAGAGTTTTAACAAAGATTTGCAT 4817 Score = 105 bits (116), Expect = 5e-18 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| | ||| |||||||| || ||||| |||||||||||| ||| | | | || || Sbjct 5482 AACGAGATGGAGGGTGGACTCCTTTTGGATGTTGTAATCGGAGAGAGTACGACCATCCTC 5423 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||| ||||| || | || | |||||||||||| ||| || || || ||||| Sbjct 5422 AAGTTGCTTGCCGGCAAAGATGAGACGTTGTTGGTCAGGTGGGATACCCTCCTTGTCTTG 5363 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || ||| |||| || | || || |||||| | ||| || || | ||| ||||| || Sbjct 5362 GATCTTGGTCTTGACGTTCTCGATAGTATCGGAACCTTCGACCTCAAGGGTGATGGTCTT 5303 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||| || || || || || || ||||||||| Sbjct 5302 ACCAGTGAGGGTCTTGACGAAGATTTGCATA 5272 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| || ||||| ||||| || ||||| |||||||| || || | | | || || Sbjct 5710 AACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGAAAGGGTACGACCATCCTC 5651 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||| || ||||| | || | |||||||||||| ||| || || || ||||| Sbjct 5650 AAGTTGCTTACCAGCAAAGATGAGACGTTGTTGGTCAGGTGGGATACCCTCCTTGTCTTG 5591 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||| ||| |||| ||| | || ||||| || | || || || | || ||||| || Sbjct 5590 AATCTTGGTCTTGACATTCTCAATGGTGTCAGAACCCTCGACCTCGAGAGTGATGGTCTT 5531 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||| |||| || || || || ||||||||| Sbjct 5530 ACCAGTCAAGGTCTTGACGAAGATTTGCATA 5500 Score = 86.0 bits (94), Expect = 5e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| || ||||| || ||||| |||||||| || ||| | | | || || | || Sbjct 5248 ATGGAGAGTGGACTCCTTTTGGATGTTGTAGTCAGAAAGAGTACGACCATCCTCGAGCTG 5189 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 || |||||| | || | |||||||||||| ||| || ||||| ||||| || || Sbjct 5188 CTTACCAGCGAAGATGAGACGTTGTTGGTCAGGTGGGATACCTTCCTTGTCTTGGATCTT 5129 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | |||| ||| | || ||||| || | || || || | || ||||| ||||| || Sbjct 5128 GGTCTTGACATTCTCAATGGTGTCAGAACCCTCGACCTCAAGAGTGATGGTCTTACCAGT 5069 Query 15340 CAGAGTTTTTACAAAAATTTGCATA 15364 || || || || || ||||||||| Sbjct 5068 GAGGGTCTTAACGAAGATTTGCATA 5044 >seq1158 Length=25781 Score = 113 bits (124), Expect = 3e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || |||||||| || || ||||| |||||||||||| ||| | | | || || Sbjct 9271 ACCAAGTGAAGGGTTGACTCCTTTTGAATGTTGTAATCGGAGAGAGTGCGACCATCCTCG 9330 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | ||| ||||| ||| | || | ||||||||| ||| ||| || || || || || | Sbjct 9331 AGTTGCTTGCCGGCGAAGATGAGACGTTGTTGATCGGGTGGGATACCCTCCTTATCTTGA 9390 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| |||| || | || ||||||||| | || || || |||||||| || ||| Sbjct 9391 ATCTTGGTCTTGACGTTCTCGATGGTATCGGAACCCTCGACCTCCAAGGTAATTGTCTTA 9450 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || || || || ||||| |||||| Sbjct 9451 CCAGTGAGGGTCTTGACGAAAATCTGCATA 9480 Score = 109 bits (120), Expect = 4e-19 Identities = 147/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| |||||||| || ||||| || ||||| ||| ||| | | | || || | || Sbjct 9504 ATGGAGGGTGGACTCCTTTTGAATATTGTAGTCGGAGAGAGTACGACCATCCTCGAGCTG 9563 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 || |||||| | ||||||||||||||||| |||||| || || ||||| ||| || Sbjct 9564 CTTACCAGCGAAGATCAAACGTTGTTGGTCAGGTGGAATACCCTCCTTGTCTTGAATCTT 9623 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | |||| || | || ||||| || | || || || | || ||||| ||||| || Sbjct 9624 GGTCTTGACGTTCTCGATGGTGTCAGAACCCTCAACCTCGAGAGTGATGGTCTTACCGGT 9683 Query 15340 CAGAGTTTTTACAAAAATTTGCATA 15364 || || || ||||||||||||||| Sbjct 9684 GAGGGTCTTAACAAAAATTTGCATA 9708 Score = 107 bits (118), Expect = 1e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| || || || ||||| || ||||| |||||||| ||| || | | | || || Sbjct 9726 AACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGACCATCCTC 9785 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||| || ||||| | || | |||||||||||| ||| || || || || || Sbjct 9786 AAGTTGCTTACCAGCAAAGATGAGACGTTGTTGGTCAGGTGGGATACCCTCCTTATCTTG 9845 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || ||| |||| || | || ||||||||| | || || || ||||| ||||| || Sbjct 9846 GATCTTGGTCTTGACGTTCTCGATGGTATCGGAACCCTCAACCTCCAAGGTGATGGTCTT 9905 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAAA 15372 || ||||| || |||||||| |||||||| ||| |||| Sbjct 9906 GCCAGTCAGTGTCTTTACAAAGATTTGCATGTTTAAAAA 9944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362120131062462