Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_004745.1 Length=30728 Score E Sequences producing significant alignments: (Bits) Value seq12163 116 7e-22 seq3006 114 3e-21 seq3418 82.4 1e-11 >seq12163 Length=619 Score = 116 bits (128), Expect = 7e-22 Identities = 205/291 (70%), Gaps = 7/291 (2%) Strand=Plus/Plus Query 1638 GCAAAGTCCATGCCTTTCCACTGGTGACGCTCAAGTATTCTGAATTTGCCACCGGCCACC 1697 || ||||||||||| || ||||||||||||| || | | ||| |||||||||| ||| Sbjct 7 GCGAAGTCCATGCCCTTGAACTGGTGACGCTCCAGCACGCGGAACTTGCCACCGGGCACT 66 Query 1698 ACCGGCGGTGCCAGTACCACGCATCCGGCACTGTCGCCACGGTGTGACGGGTCGTAACCA 1757 ||||| |||| | |||| ||||| |||||||| | | ||||||||| ||| Sbjct 67 TGGGGCGGCGCCACAATCACGATGCCGGCGCTGTCGCCCGTCTCGGCCGGGTCGTACCCA 126 Query 1758 ATCCATACCGGGCGGGAGCCGAACGGATTGGCGGCAAAGGG--TGCA-TAGTCTTCCCA- 1813 ||||| |||| |||| ||| | || ||| ||||| || | | | | |||| Sbjct 127 ATCCACACCGCGCGGTCGCCATATGGGCGCATGGCGAAGGGGCTGAACTCGCCGGCCCAC 186 Query 1814 TTCTTCCAGCGTGTCGACCATGCAGCGTTGCAGC-TCCTCGAACGGGAACACCGATGCCT 1872 | | ||||| |||| ||| ||| | |||||| || || | ||||||||| || Sbjct 187 TCCACCCAGC-TGTCCACCTGGCACGGCTGCAGCATCGTC-AGCGGGAACACGCTGGCGC 244 Query 1873 TGTCGTCAACAAATTCACACATGAACAGGTTTTTAAAATCGTCGGCGCTGT 1923 ||||||| || || || ||||| | |||||| || || |||||||||| Sbjct 245 TGTCGTCCACGAACTCGCACATCAGCAGGTTGGCGAATTCCTCGGCGCTGT 295 >seq3006 Length=629 Score = 114 bits (126), Expect = 3e-21 Identities = 183/263 (70%), Gaps = 0/263 (0%) Strand=Plus/Plus Query 17117 ATCGACCAGGAGCAGGGCTGGCATAAAACGCTGTCCAACGTCGGGGTGAACGGTGTTACC 17176 ||||| || |||| ||||||||||| ||||||||||||| | || ||| || ||| Sbjct 6 ATCGATGAGCAGCAAGGCTGGCATAAGTCGCTGTCCAACGTGGCCGTAGCCGGCGTGACC 65 Query 17177 GGCATCAGTGCATCCGTCTTCTGGGATTTGCAGAAGCCAGGCACTGATGCTGACCTGCTG 17236 |||||||| |||| ||||| ||||| | || | || || || | | |||| Sbjct 66 GGCATCAGCCGGGACGTCCATTGGGACCTGCAGGATCCGGCGACCGACGCCGGCATGCTC 125 Query 17237 AACGAGGCAGGCGTCACAACGCTGGTTCGCCGCGACGGTTTTCGTTTCTGGGGTAACCGT 17296 || | || | |||| |||||| | | | |||| | |||||||| || Sbjct 126 AATGCCGCCGATATCACCACGCTGATCAACTCCAACGGGTACAAGTTCTGGGGATCGCGC 185 Query 17297 ACCTGCTCTGATGACCCGCTGTTCCTCTTTGAAAGCTACACACGCACCGCGCAGGTACTG 17356 |||||| ||||| |||||||| ||| || | || ||| ||||| |||||| | ||| Sbjct 186 ACCTGCAGCGATGAGCCGCTGTTTGCCTTCGAGACCTCCACCCGCACGGCGCAGATCCTG 245 Query 17357 GCCGACACGATGGCTGAGGCGCA 17379 |||||||| || || |||||||| Sbjct 246 GCCGACACCATCGCCGAGGCGCA 268 >seq3418 Length=506 Score = 82.4 bits (90), Expect = 1e-11 Identities = 117/165 (71%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 582 GGCATCAGTGACGTACATGATATATCCGGCATGAGCGCCGTTTTCGTAATACTTGCGGCG 641 || ||| || | ||| | ||| | ||||| || | |||||| | ||| |||||||| || Sbjct 263 GGAATCGGTCAGGTAGAGGATGAAGCCGGCGTGCGAGCCGTTGTTGTAGTACTTGCGCCG 204 Query 642 GAACAGCGTGGCCGACTCATTCAGCCAGGCAGAGTTAAGGGCGCTGAGATATTCCGGCAG 701 |||||||||||||||||| || ||| || | | | ||| | | || ||||| Sbjct 203 GAACAGCGTGGCCGACTCGTTGAGCAGCGCGGCCTGCACGGCCGGCATCCACTCGGGCAG 144 Query 702 GCCGTACAGCTCCTGATTAATATCCGGCTCCAGCAGATGAAACAC 746 |||||||| |||||| | ||| | |||| |||| || |||| Sbjct 143 GCCGTACACCTCCTGGTCTGCATCGGACTCCCGCAGCTGGTACAC 99 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 98192393643960