Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_005056.1 Length=32684 Score E Sequences producing significant alignments: (Bits) Value seq3006 136 8e-28 seq12163 111 3e-20 seq3418 91.5 3e-14 >seq3006 Length=629 Score = 136 bits (150), Expect = 8e-28 Identities = 190/264 (72%), Gaps = 2/264 (1%) Strand=Plus/Plus Query 16487 ATCGACCAGGAGCAGGGCTGGCATAAAACGCTGTCCAACGTCGGGGTGAACGGTGTTACC 16546 ||||| || |||| ||||||||||| ||||||||||||| | || ||| || ||| Sbjct 6 ATCGATGAGCAGCAAGGCTGGCATAAGTCGCTGTCCAACGTGGCCGTAGCCGGCGTGACC 65 Query 16547 GGCATCAGCGCGTCCGTATTCTGGGATTTGCAGGAGTCCGGC-ACCGATGCTGACCTGCT 16605 ||||||||| | ||| ||||| ||||||| |||||| ||||| || | | |||| Sbjct 66 GGCATCAGCCGGGACGTCCATTGGGACCTGCAGGA-TCCGGCGACCGACGCCGGCATGCT 124 Query 16606 TAACGAGTCAGGCGTCACAACGCTGATTCGCCGTGACGGTTTCCGCTTCTGGGGTAACCG 16665 || | | | |||| |||||||| | |||| | | |||||||| || Sbjct 125 CAATGCCGCCGATATCACCACGCTGATCAACTCCAACGGGTACAAGTTCTGGGGATCGCG 184 Query 16666 TACCTGCTCTGATGATCCGCTGTTCCTCTTTGAAAACTACACCCGCACCGCGCAGGTGCT 16725 |||||| ||||| |||||||| ||| || | || ||||||||| |||||| | || Sbjct 185 CACCTGCAGCGATGAGCCGCTGTTTGCCTTCGAGACCTCCACCCGCACGGCGCAGATCCT 244 Query 16726 GGCCGACACGATGGCTGAGGCGCA 16749 ||||||||| || || |||||||| Sbjct 245 GGCCGACACCATCGCCGAGGCGCA 268 >seq12163 Length=619 Score = 111 bits (122), Expect = 3e-20 Identities = 205/293 (70%), Gaps = 11/293 (4%) Strand=Plus/Plus Query 1637 GCAAAGTCCATGCCTTTCCACTGGTGACGCTCAAGTATTCTGAATTTGCCACCGGCCACC 1696 || ||||||||||| || ||||||||||||| || | | ||| |||||||||| ||| Sbjct 7 GCGAAGTCCATGCCCTTGAACTGGTGACGCTCCAGCACGCGGAACTTGCCACCGGGCACT 66 Query 1697 ACCGGCGGTGCCAGTACCACGCATCCGGCGCTGTCGCCACGGTGTGACGGGTCGTAACCA 1756 ||||| |||| | |||| |||||||||||||| | | ||||||||| ||| Sbjct 67 TGGGGCGGCGCCACAATCACGATGCCGGCGCTGTCGCCCGTCTCGGCCGGGTCGTACCCA 126 Query 1757 ATCCAGACCGGGCGGGAGCCGAACG---GATTGGCGGCAAACGGCGCA--TAGTCTTCCC 1811 ||||| |||| |||| ||| | | | ||||| || ||| | | | | ||| Sbjct 127 ATCCACACCGCGCGGTCGCCATATGGGCGCATGGCG--AAGGGGCTGAACTCGCCGGCCC 184 Query 1812 A-TTCTTCCAGCGTGTCGACCATGCAGCGTTGCAGC-TCCTCGAACGGGAATACCGACGC 1869 | | | ||||| |||| ||| ||| | |||||| || || | |||||| || || Sbjct 185 ACTCCACCCAGC-TGTCCACCTGGCACGGCTGCAGCATCGTC-AGCGGGAACACGCTGGC 242 Query 1870 CTTGTCGTCAACAAATTCACACATGAACAGGTTTTTAAAATCGTCGGCGCTGT 1922 ||||||| || || || ||||| | |||||| || || |||||||||| Sbjct 243 GCTGTCGTCCACGAACTCGCACATCAGCAGGTTGGCGAATTCCTCGGCGCTGT 295 >seq3418 Length=506 Score = 91.5 bits (100), Expect = 3e-14 Identities = 119/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 581 GGCATCGGTAACGTACATGATGTATCCGGCATGTGCGCCGTTTTCGTAATACTTGCGGCG 640 || |||||| | ||| | |||| | ||||| || | |||||| | ||| |||||||| || Sbjct 263 GGAATCGGTCAGGTAGAGGATGAAGCCGGCGTGCGAGCCGTTGTTGTAGTACTTGCGCCG 204 Query 641 GAACAGCGTGGCCGACTCATTCAGCCAGGCAGAGTTAAGGGCGCTGAGATATTCCGGCAG 700 |||||||||||||||||| || ||| || | | | ||| | | || ||||| Sbjct 203 GAACAGCGTGGCCGACTCGTTGAGCAGCGCGGCCTGCACGGCCGGCATCCACTCGGGCAG 144 Query 701 GCCGTACAGCTCCTGATTAATATCCGGCTCCAGCAGGTGAAACAC 745 |||||||| |||||| | ||| | |||| |||| || |||| Sbjct 143 GCCGTACACCTCCTGGTCTGCATCGGACTCCCGCAGCTGGTACAC 99 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 104450598986664