Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_005135.1 Length=173591 Score E Sequences producing significant alignments: (Bits) Value seq426 122 1e-22 seq892 107 2e-18 >seq426 Length=230632 Score = 122 bits (134), Expect = 1e-22 Identities = 178/248 (72%), Gaps = 4/248 (2%) Strand=Plus/Minus Query 6985 ATCACCCGGCTTCAGGAGTGCTTGGTAAACTGCCTGGTTTGCTTGTGAACCGGAATGAGG 7044 |||||| || || | ||| |||||||| || |||||| || || || |||||||| Sbjct 73709 ATCACCAGGATTTAAACATGCGTGGTAAACGGCTGTGTTTGCCTGAGATCCAGAATGAGG 73650 Query 7045 TTGAACGTTTGCGAAATTGCAACT--AAACAGTTCTTTAGCACGCTCAATTGCCAGGTTC 7102 || |||||||| | ||| || || ||| | ||| ||||| | ||||| || | | | Sbjct 73649 CTGTACGTTTGC-ATATT-CAGCTCCAAATAATTCCTTAGCTCTGTCAATAGCAATCTGC 73592 Query 7103 TCGATTTCATCGGCTTTTACGCAGCCGCCATAATACCGTTTGCCCGGATATCCCTCAGCA 7162 ||||| | || || | |||| ||||| || || | |||||| ||||||||||||||| Sbjct 73591 TCGATAACGTCAACTACTTCGCAACCGCCGTAGTATCTTTTGCCAGGATATCCCTCAGCA 73532 Query 7163 TACTTGTTGGTAAAAATAGAACCCTGTGCTTTCATAACATCGTCTGACACATAGTTTTCG 7222 || ||||| || |||| ||| || ||||| ||| || || || ||| | ||||| Sbjct 73531 TATTTGTTAGTTAAAACAGACCCAGCTGCTTCCATTACCTCATCACTTACAAAATTTTCT 73472 Query 7223 GACGCAAT 7230 || || || Sbjct 73471 GAAGCGAT 73464 >seq892 Length=133947 Score = 107 bits (118), Expect = 2e-18 Identities = 151/210 (72%), Gaps = 8/210 (4%) Strand=Plus/Minus Query 6986 TCACCCGGCTTCAGGAGTGCTTGGTAAACTGCCTGGTTTGCTTGTGAACCGGAATGAGGT 7045 || ||||||| ||| ||||| || | || |||||||| || ||||||| || Sbjct 37185 TCGCCCGGCTGCAGCAGTGCCAGGAATACGGCCTGGTTCATCTGGCTGCCGGAATTCGGC 37126 Query 7046 TGAACGTTTGCGAAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCT-- 7103 || || || || | | ||| | ||||||| ||| || ||||| || ||||| |||| Sbjct 37125 TGCACATTAGCATATTCGCAGTTGAACAGTTTTTTGGCGCGCTCGATGGCCAG-TTCTTC 37067 Query 7104 --CGATTTCATCGGCTTTTACGCAGCCGCCATAATACCGTTTGCCCGGATATCCCTCAGC 7161 |||| |||| | ||||||||||||||| || ||||||||||| ||||| || Sbjct 37066 CGCGAT---ATCGACAAACTGGCAGCCGCCATAATAGCGCTTGCCCGGATAGCCCTCGGC 37010 Query 7162 ATACTTGTTGGTAAAAATAGAACCCTGTGC 7191 ||| |||||||| | || || |||||||| Sbjct 37009 ATATTTGTTGGTCATGATCGAGCCCTGTGC 36980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 555270301620720