Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq232 210 2e-49 seq2491 150 2e-31 seq2141 100 2e-16 >seq232 Length=384298 Score = 210 bits (232), Expect = 2e-49 Identities = 499/747 (67%), Gaps = 23/747 (3%) Strand=Plus/Minus Query 12860 TTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTT 12919 |||||||| || ||| | ||||||||| || || |||||||| | | ||||| | Sbjct 339490 TTTTGATACTCTGCAACACGTTTTTCAAAGAAATTAGTTTTTCCCTGAAGTGAAATCATA 339431 Query 12920 TCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACACCCTAATTCTAGTAAC 12979 ||||| |||||||| |||||| || | || | ||| || ||||||| ||| Sbjct 339430 TCCATGAAATCGAATGGATTTGCTGATCCGTAAACACGCTCACAGCCCAATTCTACTAAT 339371 Query 12980 AATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAAT 13039 ||||| || ||||| ||||||| |||||| |||| | | || |||||| || ||||| Sbjct 339370 AATCTATCGGCAACGAACTCTAAATACTGTGTCATAAGACCAGCGTTCATACCAATTAAA 339311 Query 13040 TTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATG 13099 |||| || | || |||||| | ||| | | |||| ||||| | || |||| || || Sbjct 339310 CTTACCGGAAGAGATTCTGTGATAAATTGTCTTTCGATATCTAAAGCATCGACAATAATT 339251 Query 13100 TCTCTTATTACGTTCTCTAATGGAGGATTTGATA------GATGCTTAAACATCATACAT 13153 ||| | ||| | ||| ||| || || | || || || | Sbjct 339250 TCTTTAATTC---TATCTTTTGGCACTTTGTTTACCAAATGGTGATTGTGCAGGTGAACC 339194 Query 13154 GCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCC 13213 ||||||||||| || | ||||| || | | || | || || || ||||||| ||| Sbjct 339193 GCAAAATCACAATGTACACCTTCGTCACGAGAAATCAATTCATTAGAGAATGTTAAACCT 339134 Query 13214 GGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATT 13273 ||||| | || |||||||| | |||| | || | | || | ||||| ||||| ||| Sbjct 339133 GGCATTAAACCACGTTTTTTCAACCAATAAATTGAACAGAAAGCTCCCGAGAAAAAGATT 339074 Query 13274 CCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTATC 13333 ||||||||||| ||||| || || | |||||| || | | | | | || ||| Sbjct 339073 CCTTCAACTGCAGCAAAAGCAATTAGTCTTTCAGCAAATGAA------TCAGATTCGATC 339020 Query 13334 CACTTTCTGGCCCAGTTTGCTTTTTGTTTAA-CGCAGTTCATATTTTCTATTGCGTTAAA 13392 || ||| ||||| | |||||||| |||| |||| | | ||||| || ||||| Sbjct 339019 CATTTTAAAGCCCATTCTGCTTTTTTCTTAATTGCAG-GAAAAACTTCTAAAGCATTAAA 338961 Query 13393 TAA--ATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATT 13450 || | |||||| | ||| |||| | ||| ||||| || ||||| ||| | Sbjct 338960 CAACTCTGATTTTTCTGCTT--CGTCTTTTACATACGTATCAATTAATAAAGAATAAGTC 338903 Query 13451 TCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACC 13510 || |||||||| |||||| || |||||||||||||| | | || || | Sbjct 338902 TCACTGTGAATATTCTCCATCATGATCTGGAAACCATAAAAGAACTTTGCTTCGGCGTAT 338843 Query 13511 TGAACTTCG-GAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGC 13569 ||||| ||| | ||||| | || || | |||||||| || || ||||| |||||| Sbjct 338842 TGAACCTCGTTAACAAAAT-TCTCAGCCAGATTTTCGTTTACGATTCCGTCTGAAGCAGC 338784 Query 13570 aaaaaaaGCAAGTATGTGCTTAATAAA 13596 |||||| || | || || ||||| || Sbjct 338783 AAAAAATGCTAAAATATGTTTAATGAA 338757 >seq2491 Length=10632 Score = 150 bits (166), Expect = 2e-31 Identities = 478/734 (65%), Gaps = 14/734 (2%) Strand=Plus/Minus Query 12858 TTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATAT 12917 |||||||||| || | || | ||| ||||| || || ||||| |||| | || || Sbjct 4865 TTTTTTGATAATCACCCACACGTTTCTCAAAGAAATTGGTTTTGCCTTGCAGGGAGATCA 4806 Query 12918 TTTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTT-TACACCCTAATTCTAGT 12976 | ||||||||||| || ||||| | | | ||| |||||| || | || | ||| | Sbjct 4805 TCTCCATAAAATCAAACGGATTGGTGGCATGATA-TATTTTGGTATAACCCAGTTCCTGC 4747 Query 12977 AACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATT 13036 | | ||||||| ||||||||||| || |||||| ||| | | ||||| || || Sbjct 4746 AGCCATCTGTCTGCAACAAACTCAATATACTGTGACATCAGTTTTGCATTCATCCCGATC 4687 Query 13037 AATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACT 13096 | || |||| || ||||| | ||| | ||||| || || || || ||| | Sbjct 4686 AGGGCAACCGGCAAGGCATCTGTAATAAATTCCTTTTCGATTTCTACCGCGTCGCGGATA 4627 Query 13097 ATGTCTCTTATTACGTTCT--CTAATGGAGGATTTGATAGATGCTTAAACATCATACATG 13154 || | | || | || || | | |||| || ||| | | || || | Sbjct 4626 ATTCCATGAACGACTTCCTGGCTCA--GTTTATTTTTGAGCATTTTATAAAGCAGGCAGG 4569 Query 13155 CAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCG 13214 |||| ||||| |||| || |||||||| || | ||| || ||| ||||| || | Sbjct 4568 CAAATTCACAATGCATCCCCTCATCTCTGGAAATCAACTCATTACTAAAGGTTAGCCCTG 4509 Query 13215 GCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaa-aaTATT 13273 |||| || |||| |||||| | ||| || || | | || | | |||| || || || Sbjct 4508 GCATCAGGCCTCTTTTTTTCAACCAGAAGATCGAA-CAGAAGCTCCCGCTGAAGAAAATG 4450 Query 13274 CCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTATC 13333 ||||| ||||| || || || | ||| | ||| || | |||| | ||| ||| Sbjct 4449 CCTTCCACTGCGGCGAAAGCCACCAAACGTTCGGCAAA------ATTTCCGCCCTCAATC 4396 Query 13334 CACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAAT 13393 || ||||| | |||||||| || || || | | |||| || | || Sbjct 4395 CAGCGCAATGCCCATTCTGCTTTTTTCTTTACACAAGGAACCGTCTCTACGGCATGGAAC 4336 Query 13394 AAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCT 13453 | | |||||| | | ||| |||||| ||||| |||| | ||| |||| Sbjct 4335 AGCCTGTCTTTTTCTTCAGGATCTTTAATATAGGTATCGATCAGCAGCGCATAGGTTTCA 4276 Query 13454 GAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGA 13513 || || || ||||||||| || ||||| ||||||||||| | || || | | ||| Sbjct 4275 GAGTGGATGTTTTCCATCATGATCTGGAAGCCATAAAAACAACGGGCTTCGGGAAGCTGT 4216 Query 13514 ACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaa 13573 |||||| || | |||| | |||||| || || || |||||||| ||||||||| Sbjct 4215 ACTTCGCTCATGAAGTTCACTGCAAGGTTTTCATTTACAATGCCGTCACTTGCAGCAAAA 4156 Query 13574 aaaGCAAGTATGTG 13587 ||||||||||| || Sbjct 4155 AAAGCAAGTATATG 4142 >seq2141 Length=1138 Score = 100 bits (110), Expect = 2e-16 Identities = 185/269 (69%), Gaps = 3/269 (1%) Strand=Plus/Plus Query 13442 CTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCC 13501 ||||| | ||||||||||||||||| || || |||||||||||||| ||||||||||| Sbjct 71 CTATAAGTCTCTGAATGAATATTTTCAATGGCAATTTGGAAACCATAGAAACATCTAGCT 130 Query 13502 TCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCA 13561 || | | || || || || ||||| || ||||| || || || || || ||| Sbjct 131 TCAGGGATTTGGACCTCTGACATGAATCTGGTGGCCAAGTTCTCATTGACGATACCATCA 190 Query 13562 CTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTC--TGA-CAAC 13618 || |||||||| ||||| | | || ||||||| | ||| || || ||| | Sbjct 191 CTGGCAGCAAAGAAAGCCAAGACGTTTGTAATAAAGTGACGTTCATTGTCATTGAGCTTG 250 Query 13619 TTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCA 13678 || ||| || | || ||| | |||| |||||| | |||||||| || Sbjct 251 TTCTCCCATTCGTTGATGTCACTTGCAAGGTCTATCTCCTCTGCAGTCCAAAAGCTTGCT 310 Query 13679 ACAGCCTTCTTATACATCATCCATATATC 13707 |||||||||| || | |||||||||| Sbjct 311 TCAGCCTTCTTGTAGAGATTCCATATATC 339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430912109733564