Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1158 113 1e-19 seq444 109 1e-18 seq2141 98.7 2e-15 seq915 95.1 3e-14 >seq1158 Length=25781 Score = 113 bits (124), Expect = 1e-19 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | || || || || || || || ||||| || || || | |||||| Sbjct 9040 AGGACGAGATGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTACGACCGTCC 9099 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || ||||| || |||||||| || || | |||||||| || || || || || || || Sbjct 9100 TCAAGTTGCTTACCAGCAAAGATGAGACGTTGTTGATCGGGTGGGATACCCTCCTTGTCT 9159 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 |||||||| | || || || || | |||||| | || ||||| || || || ||| Sbjct 9160 TGAATCTTGGTCTTGACGTTCTCGATGGTATCAGAACCCTCAACCTCAAGGGTGATGGTC 9219 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||||| | || || ||||| || ||||| Sbjct 9220 TTACCAGTCAAGGTCTTGACAAAGATTTGCAT 9251 Score = 113 bits (124), Expect = 1e-19 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || || ||||| || || || || ||||| | ||| || || ||||| || || Sbjct 9283 GTTGACTCCTTTTGAATGTTGTAATCGGAGAGAGTGCGACCATCCTCGAGTTGCTTGCCG 9342 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | |||||||| || || || || || ||||| |||||||| | || Sbjct 9343 GCGAAGATGAGACGTTGTTGATCGGGTGGGATACCCTCCTTATCTTGAATCTTGGTCTTG 9402 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||||||| | || ||||| | ||||| ||||||||||| || || Sbjct 9403 ACGTTCTCGATGGTATCGGAACCCTCGACCTCCAAGGTAATTGTCTTACCAGTGAGGGTC 9462 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 9463 TTGACGAAAATCTGCAT 9479 >seq444 Length=38654 Score = 109 bits (120), Expect = 1e-18 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || || || || || || || || ||||| | ||| || || ||||| || || Sbjct 5013 GTGGACTCCTTTTGGATGTTGTAATCGGAGAGAGTACGACCATCCTCAAGTTGCTTGCCG 4954 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | ||||| ||||| || ||||| || || || || ||||| | || Sbjct 4953 GCAAAGATGAGACGTTGTTGGTCAGGTGGAATTCCCTCCTTGTCTTGGATCTTGGTCTTG 4894 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | |||||| | || ||||| | ||||||||||| || || || ||| Sbjct 4893 ACGTTCTCGATAGTATCGGAACCCTCGACCTCCAAGGTAATAGTCTTGCCTGTCAGAGTT 4834 Query 104543 TTTACAAATATCTGCATT-TTGTGTACAGTATTTATT 104578 || ||||| || |||||| |||| || | ||||| || Sbjct 4833 TTAACAAAGATTTGCATTGTTGTTTA-ATTATTTGTT 4798 Score = 107 bits (118), Expect = 4e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | || || || || || || || |||||||| ||||| | ||| || Sbjct 5256 AGGACGAGATGGAGAGTGGACTCCTTTTGGATGTTGTAGTCAGAAAGAGTACGACCATCC 5197 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || ||||| || || || | ||||| ||||| || || ||||| || || Sbjct 5196 TCGAGCTGCTTACCAGCGAAGATGAGACGTTGTTGGTCAGGTGGGATACCTTCCTTGTCT 5137 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || ||||| | || ||||| || | ||| || | || ||||| || || || ||| Sbjct 5136 TGGATCTTGGTCTTGACATTCTCAATGGTGTCAGAACCCTCGACCTCAAGAGTGATGGTC 5077 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||||| || || || || || || ||||| Sbjct 5076 TTACCAGTGAGGGTCTTAACGAAGATTTGCAT 5045 Score = 105 bits (116), Expect = 2e-17 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || ||||| | || || || || || || || || || || ||||| | ||| || Sbjct 5485 AAGAACGAGATGGAGGGTGGACTCCTTTTGGATGTTGTAATCGGAGAGAGTACGACCATC 5426 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || ||||| || || ||||| || || | ||||| ||||| || || || || || || Sbjct 5425 CTCAAGTTGCTTGCCGGCAAAGATGAGACGTTGTTGGTCAGGTGGGATACCCTCCTTGTC 5366 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 || ||||| | || || || || | |||||| | ||| ||||| || || || || Sbjct 5365 TTGGATCTTGGTCTTGACGTTCTCGATAGTATCGGAACCTTCGACCTCAAGGGTGATGGT 5306 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||||||| || || || || || || ||||| Sbjct 5305 CTTACCAGTGAGGGTCTTGACGAAGATTTGCAT 5273 Score = 104 bits (114), Expect = 5e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || || || || || |||||||| || || | ||| || || ||||| || ||| Sbjct 5697 GTGGACTCCTTTTGGATGTTGTAGTCAGAAAGGGTACGACCATCCTCAAGTTGCTTACCA 5638 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | ||||| ||||| || || || || || || |||||||| | || Sbjct 5637 GCAAAGATGAGACGTTGTTGGTCAGGTGGGATACCCTCCTTGTCTTGAATCTTGGTCTTG 5578 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| || | || ||||| || || || ||||||||||| | || Sbjct 5577 ACATTCTCAATGGTGTCAGAACCCTCGACCTCGAGAGTGATGGTCTTACCAGTCAAGGTC 5518 Query 104543 TTTACAAATATCTGCAT 104559 || || || || ||||| Sbjct 5517 TTGACGAAGATTTGCAT 5501 >seq2141 Length=1138 Score = 98.7 bits (108), Expect = 2e-15 Identities = 204/298 (68%), Gaps = 7/298 (2%) Strand=Plus/Minus Query 268696 AGATAGATTTGTGATATTTCCAATACAGCATGGTGATATATGGAGGATGTACAAACAGGC 268755 |||||||||||| | || ||||| |||| |||||||||| | ||||| |||| Sbjct 373 AGATAGATTTGTATTGTTCCCAATCAAGCACTCCGATATATGGAATCTCTACAAGAAGGC 314 Query 268756 CGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGG-- 268813 | || |||||||||| ||| || |||| || | |||| | | || ||| Sbjct 313 TGAAGCAAGCTTTTGGACTGCAGAGGAGATAGACCTTGCAAGTGACATCAACGAATGGGA 254 Query 268814 -AAAAATTTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAGT 268872 || || | || | ||| | ||||| | | | | || || ||||| | Sbjct 253 GAACAAGCTCAATGACAATGAACGTCACTTTATTACAAACGTCTTGGCTTTCTTTGCTGC 194 Query 268873 TAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAG-TTC-TGTCAAGAGGTACAGATT 268930 |||||||||||||| || || || || | | || ||| ||||| ||||| || || Sbjct 193 CAGTGATGGTATCGTCAATGAGAA-CTTGGCCACCAGATTCATGTCA-GAGGTCCAAATC 136 Query 268931 CCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGA 268988 |||||||| |||||||| || || ||||| || || || ||||||||||||||||||| Sbjct 135 CCTGAAGCTAGATGTTTCTATGGTTTCCAAATTGCCATTGAAAATATTCATTCAGAGA 78 >seq915 Length=13476 Score = 95.1 bits (104), Expect = 3e-14 Identities = 200/292 (68%), Gaps = 6/292 (2%) Strand=Plus/Plus Query 268998 TATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTCTTCTAT-G 269056 |||| || ||||||||||| | || | ||||||| | ||||| | | || | Sbjct 1 TATTGATTGATACTTATATTAAGAATCCTGAGAAAAAGAAGAATTTATTTAATGCCATCG 60 Query 269057 AGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAACGATAGC 269116 ||| | | | ||||| | || || |||| |||||| ||| |||||| | | | | Sbjct 61 AGACCATTCCA-TGTGTAAAGAAGAAGGCTGAGTGGGCTATGAGATGGATTACCAACTCC 119 Query 269117 GCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGG 269176 | | | | || | || || || ||||| |||||||| ||||| || ||| | || Sbjct 120 AAGTCATTTGCTGAGCGTTTGGTCGCCTTTGCAGCTGTAGAGGGTATCTT-TTTCAGTGG 178 Query 269177 T--CTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCT 269234 | ||| ||| | ||||||||| | ||||| | ||| | ||||| ||||| || |||| Sbjct 179 TAGCTTCTGCTCC-ATCTTTTGGCTCAAGAAGCGTGGCTTGATGCCCGGATTGACATTCT 237 Query 269235 CTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTTT 269286 ||||||| | || || | ||||| ||| | ||||| ||||| || ||||| Sbjct 238 CTAACGAGCTCATCAGTCGTGACGAGGGTCTTCACTGTGACTTTGCCTGTTT 289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151200984828456