Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_005340.1 Length=30636 Score E Sequences producing significant alignments: (Bits) Value seq12163 134 3e-27 seq3006 122 2e-23 seq1269 93.3 8e-15 >seq12163 Length=619 Score = 134 bits (148), Expect = 3e-27 Identities = 380/577 (66%), Gaps = 28/577 (5%) Strand=Plus/Plus Query 2375 GCAAAGTCCATGCCTTTCCACTGGTGACGCTCCAGCATGCGAAACTTGCCACCCGAAACC 2434 || ||||||||||| || |||||||||||||||||| ||| ||||||||||| | || Sbjct 7 GCGAAGTCCATGCCCTTGAACTGGTGACGCTCCAGCACGCGGAACTTGCCACCGGGCACT 66 Query 2435 ACCGGCGGCGCGAGTACGACACATCCGGCACTGTCGCCGGTGTGGGACGGGTCGTAGCCA 2494 |||||||| | | || ||||| |||||||| || | || ||||||||| ||| Sbjct 67 TGGGGCGGCGCCACAATCACGATGCCGGCGCTGTCGCCCGTCTCGGCCGGGTCGTACCCA 126 Query 2495 ATCCAGACCGGGCGTGAGCCGAATGGATGGTCGGCGAACGGGGCGAA---GTCCTCCCA- 2550 ||||| |||| ||| ||| |||| | |||||| ||| ||| | | |||| Sbjct 127 ATCCACACCGCGCGGTCGCCATATGGGCGCATGGCGAAGGGGCTGAACTCGCCGGCCCAC 186 Query 2551 TGTTTCCATCACGTCGACCATGCAGCGCTGCAGC-TCCTCGAACGGGAATACAGATGCCT 2609 | ||| | ||| ||| ||| |||||||| || || | |||||| || || Sbjct 187 TCCACCCAGC-TGTCCACCTGGCACGGCTGCAGCATCGTC-AGCGGGAACACGCTGGCGC 244 Query 2610 TATCGTCGACAAACTCGCACATAAACAGGTTTTTAAAGTCCTCATCACTGTTTTCGCGTC 2669 | ||||| || ||||||||||| | |||||| || ||||| | |||| Sbjct 245 TGTCGTCCACGAACTCGCACATCAGCAGGTTGGCGAATTCCTCGGCGCTGT--------- 295 Query 2670 TGAGCTGGTCGAGGTCGAACAGGGTGCAGCCACCGGCAAGGGCGTCCTCAATAGTGACAA 2729 | | |||||||| ||| || | | | ||||| | ||||| | Sbjct 296 -------NNCCACATCGAACAGATCGCACCCTCGGTCGGCCGCGTCGAGCACTGTGACGA 348 Query 2730 TCTGCCGCCACTGTCCGTCAGCGCAAAGAAGCCCACCGGCGAGCGCGCTGTGACTGATGT 2789 |||||||||| |||| |||| | | |||| | | ||| || ||| |||| | Sbjct 349 TCTGCCGCCAGATAGCGTCCTCGCAGCGTCGGCCACTGCCCAGCCGGCCGTGGCTGACAT 408 Query 2790 CGATTTCGAT-GCGGTCAGCAGCACTGGCGCGCCCCTTGTTGAACAGCTCGCCAGACCAG 2848 ||| ||||| | | | || | ||| | ||||||||||| ||||||| | |||| Sbjct 409 CGA--TCGATACCTGCTGGGAGGTC-GGCTTG-CCCTTGTTGAAGCGCTCGCCTGTCCAG 464 Query 2849 AAGGGATAAGCGCCGTGCGCCAGCGTGGAAGGTGTCGAAAAGTAAGTTGAGCGCAGATGC 2908 || || || ||||||||| |||||||| || ||||| || |||| | | Sbjct 465 AAATCGTAGGCTTCGTGCGCCATGGTGGAAGGCGTGCTGAAGTAGGTCTTGCGCCATTTC 524 Query 2909 TTTTGCGAGGCCATGCCCGAGGCGACTTTGCGCAGCT 2945 || ||| |||||||| |||||| ||| ||||| Sbjct 525 TTGTGCATCGCCATGCCGCTGGCGACCTTGTTCAGCT 561 >seq3006 Length=629 Score = 122 bits (134), Expect = 2e-23 Identities = 193/272 (71%), Gaps = 6/272 (2%) Strand=Plus/Plus Query 15556 GGCTGGCACAAAACCCTGTCTAACGTTGGTGTACAGGGCGTTACCGGCATCAGCGCCTCA 15615 |||||||| || | ||||| ||||| | ||| ||||| |||||||||||| Sbjct 21 GGCTGGCATAAGTCGCTGTCCAACGTGGCCGTAGCCGGCGTGACCGGCATCAGCCGGGAC 80 Query 15616 GTGTTCTGGGATTTGCAGGCATCCGGC-ACCGATGCTGACCTGCTCAACGAGGCCGGGGT 15674 || ||||| |||||| ||||||| ||||| || | | ||||||| | |||| | Sbjct 81 GTCCATTGGGACCTGCAGG-ATCCGGCGACCGACGCCGGCATGCTCAATGCCGCCGATAT 139 Query 15675 TACAACGCTGGT--ACGCAAGGACGGTTTCCGCTTCTGGGGTAACCGCACCTGCTCGGAT 15732 || |||||| | || | | |||| | | |||||||| ||||||||| ||| Sbjct 140 CACCACGCTGATCAACTCCA--ACGGGTACAAGTTCTGGGGATCGCGCACCTGCAGCGAT 197 Query 15733 GACCCGCTTTTTCTGTTTGAGAACTACACTCGCACCGCGCAGGTACTGGCCGACACGATG 15792 || ||||| ||| || |||| || ||| ||||| |||||| | ||||||||||| || Sbjct 198 GAGCCGCTGTTTGCCTTCGAGACCTCCACCCGCACGGCGCAGATCCTGGCCGACACCATC 257 Query 15793 GCCGAGGCGCACATGTGGGCGGTCGACAAGCC 15824 ||||||||||| || ||||||||||| Sbjct 258 GCCGAGGCGCAGTTGGTCTACGTCGACAAGCC 289 >seq1269 Length=1066 Score = 93.3 bits (102), Expect = 8e-15 Identities = 168/238 (71%), Gaps = 6/238 (3%) Strand=Plus/Plus Query 3382 GTTACGGTTGGCAACGTTGGGGTTAAGGTCGGCCTCGTTGCCGGTCTGGCTG-TAGCGGT 3440 ||| |||||||| || ||||| ||||| |||||||||||| | ||| || || | Sbjct 16 GTTGCGGTTGGCGACCGCTGGGTTCAGGTCCGCCTCGTTGCCGC-CGCCCTGGTAACGCT 74 Query 3441 TGACGCGCGCCAGTCGCTCAATCTGCCGCCCGAGCAGGTCAATCTCTTTGAAGTCGCCGC 3500 || ||| ||| | ||||| | |||||| |||||||| ||||||||||||||||||| Sbjct 75 GGATGCGGGCCTGCCGCTCCAGCTGCCGATGCAGCAGGTCGATCTCTTTGAAGTCGCCGC 134 Query 3501 CTGACTTTTGCGGCTTGGCGATGAGCTGAATCAGGCGCGCCT-CAAGGCTGCTTTCGACA 3559 | | ||| |||| ||| || || ||||||| |||||| || | ||| Sbjct 135 CGGTCTTACCTTCCTTGTGGATCAGGATGGCCAACCGCGCCTCCAAGGC-GCCGCCAACA 193 Query 3560 CGGGAAATCGGT-GCGATGCCGTCCCAGCCGTCGCGCTGTTTCCAGCTCTGCACGGTC 3616 || | |||| || || |||||| |||||||| |||||||| || |||||| Sbjct 194 CGCTCCA-CGGTATCGGCGCGGTCCCATTCGTCGCGCGCCTTCCAGCTGTGGACGGTC 250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97898040427432