Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_005344.1 Length=39043 Score E Sequences producing significant alignments: (Bits) Value seq3951 161 2e-35 seq5569 123 6e-24 seq2342 122 2e-23 seq6167 100 7e-17 >seq3951 Length=514 Score = 161 bits (178), Expect = 2e-35 Identities = 106/117 (91%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 37243 ATGAGCAGAGTCACCGCAATTATCTCCGCTCTGGTTATTTGCATCATCGTCTGCCTGTCA 37302 |||| |||||| ||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct 352 ATGAACAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCA 411 Query 37303 TGGGCTGTTAATCATTACCGTGATAATGCAATCGCCTACAAAGAGCAGCGCGATAAA 37359 |||||||||||||||||||||||||| || || ||||||||| |||||||| ||| Sbjct 412 TGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAA 468 >seq5569 Length=2135 Score = 123 bits (136), Expect = 6e-24 Identities = 137/181 (76%), Gaps = 4/181 (2%) Strand=Plus/Minus Query 33053 GGCATCCATTCGTTCTTCAGACTCCTGAAGAAGCGTTCCATTGGGCTGTTATCCCAGCAG 33112 |||| |||||| | |||||||| | |||||||||||||||||| ||||||||||||||| Sbjct 560 GGCACCCATTCTGTTTTCAGACTGCGGAAGAAGCGTTCCATTGGACTGTTATCCCAGCAG 501 Query 33113 TTTCCGCGCCGGCTCATACTCTGTCTGATCTGGTATCGCCACAATAACTGCCGGAACTGC 33172 ||||| || ||||| | ||| || | ||| ||| ||||| | | || | | | | Sbjct 500 TTTCCCCGTCGGCTGACACTTTGCTTTATCCTGTAACGCCAGAGAAGTTGTTGATATTTC 441 Query 33173 CTGCTCGTATAATGACTGCCCTGATCGCTGTGGAACATCAC--CCCGCCGGGCTTACCAC 33230 | ||||| ||||| ||||| ||||| |||||||| || ||||| |||| ||||| Sbjct 440 AGTCCTGTATATTGACTTCCCTGGTCGCTATGGAACATGACGTCCCGC--GGCTGACCAC 383 Query 33231 G 33231 | Sbjct 382 G 382 >seq2342 Length=4104 Score = 122 bits (134), Expect = 2e-23 Identities = 73/77 (95%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 16788 ACCTTCTCATCAAGCCAATCCGCCCACCACTGCATCATTTCTCTGCGCTTATCGAGATAC 16847 || || |||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 123 ACTTTTTCATCAAGCCAATCCGTCCACCACTGCATCATTTCTCTGCGCTTATCGAGATAC 182 Query 16848 TGAGCATGGTTGTAAAT 16864 ||||| ||||||||||| Sbjct 183 TGAGCGTGGTTGTAAAT 199 Score = 122 bits (134), Expect = 2e-23 Identities = 70/72 (97%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 18426 CAGGCAATAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATA 18485 || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1784 CACGCAAGAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATA 1843 Query 18486 TTGGTTACGTCT 18497 |||||||||||| Sbjct 1844 TTGGTTACGTCT 1855 Score = 96.9 bits (106), Expect = 9e-16 Identities = 62/68 (91%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 18798 ATCATCTCCATAAAATAAAACTCGCCGTAGCGAGTTCAGATAAAAGAAATCCCCGCGAAT 18857 ||||||||||||||| ||||| |||||||||||||||||||||||||||||| || | | Sbjct 1974 ATCATCTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAAGAAATCCTCGTCAGT 2033 Query 18858 GCGAGGAT 18865 |||||||| Sbjct 2034 GCGAGGAT 2041 >seq6167 Length=616 Score = 100 bits (110), Expect = 7e-17 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 21675 TAAACCTCAGAGCCTTTTCGCAGATATTCGCTGGCAATTTCTGCCAGTTTCCCGCTCATT 21734 || |||| | ||| || ||||||||||| | || | ||| || || || ||| || Sbjct 427 TAGACCTGCGCGCCCTTGCGCAGATATTCACCAGCCACTTCCGCGAGCTTGCCGAACAGC 368 Query 21735 ACCACGCGGTGCCACTCCGTCTGCTCCTTTTGCTCTCCAGTTTGCTTATCACGCCATTGT 21794 |||||||||||||| |||||||||||| ||| || || || || |||||||| | Sbjct 367 ACCACGCGGTGCCATTCCGTCTGCTCCCGCATCTCCCCCGTCTGTTTGTCACGCCAGCTT 308 Query 21795 TCTGACGTAGCAACTGTAAGGTTTGCAAATGCCGTTCCTGATGGTGA-ATATCTGATTTC 21853 |||||||| || || |||||||| | || || || | ||| || || | || ||| Sbjct 307 TCTGACGTGGCGACCTGCAGGTTTGCCACTG-CGCCCCCGTTGGGGATGTAACGGACTTC 249 Query 21854 TGGATCATGCCCAAGGCGACCAATAATGATCACCTTATT 21892 ||||||| || || || || | | ||| ||||| || Sbjct 248 CGGATCATTGCCCAGACGCCCGACGAGGATGACCTTGTT 210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124796165333420