Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_005357.1 Length=42493 Score E Sequences producing significant alignments: (Bits) Value seq2271 324 4e-84 seq5618 120 8e-23 >seq2271 Length=37941 Score = 324 bits (358), Expect = 4e-84 Identities = 467/656 (71%), Gaps = 2/656 (0%) Strand=Plus/Minus Query 18968 AGTTCGGACACGTCCACATTGGCGATGCGGACGACGTAACGCCAGTCGCGCAGGGTCAGG 19027 || ||| ||| || | ||||||||||| || ||||| |||||||| ||||| | ||| Sbjct 27000 AGATCGCTCACATCGATGTTGGCGATGCGCACAACGTAGCGCCAGTCACGCAGTGCCAGA 26941 Query 19028 CCGATGTCCCACTTGTAGTGGGTGCGGTAGCCCTGGTAGCGGCCGCCGGCGGCGTCGATC 19087 ||| | ||||| ||||| ||||| || ||||||||||| || || ||| |||| | Sbjct 26940 CCGTTATCCCATTTGTAATGGGTACGATAGCCCTGGTATTTACCACCACTGGCATCGACC 26881 Query 19088 AGCGTGTCCTCGCCGAGGTCACGCGATTGCAGGCCGGCCTGCGAACCCTTCGGGTAGATG 19147 || || | ||| || |||| | | || ||||| || | | || |||||| ||||| Sbjct 26880 AGGGTTTGCTCACCAAGGTTCTGAGTCTGTAGGCCAGCTTTCTGCCCTTTCGGGAAGATG 26821 Query 19148 GTATGCAGGGTGTTCGGCCCCCACACCGTCAGCCAGATGGATGCGTTGTCGCTGCCCGTG 19207 ||| | |||||| ||||| ||| ||||||||| || | ||| || |||| || Sbjct 26820 CCATGAACGGTGTTTTCACCCCATACCACCAGCCAGATAGAGGTGTTATCAGTGCCGGTA 26761 Query 19208 CCGCCGGCGTCGATGATGTTCTGGCCGTTCTCCGCGGACAGGCTGTTGAAGCGCGGCGTC 19267 ||||| |||||||| |||||||||||||| | || ||| |||| | | || | | | Sbjct 26760 CCGCCAGCGTCGATAATGTTCTGGCCGTTACCTGCAGACTTGCTGGAGTAACGGGATGAC 26701 Query 19268 AGGCCCATGAACTTCTCGGCGTCGATGCTGGAATCGCCGTAGAACAGCGTGGTCGCCTGG 19327 ||||||||||| | || | || | |||| |||||||||||||||||| ||| Sbjct 26700 AGGCCCATGAATTGCTGTGGGTTCACACTGGTATCGCCGTAGAACAGCGTCTGAGCCATC 26641 Query 19328 GTCTGGTTCATGCCTTCGATGAAGGCGCGGTCTTCGGACAGGCGCCAGGCGGCGGAATTG 19387 ||||||||| ||||||||||| || |||||||| ||||| || | | || | |||| Sbjct 26640 TGCTGGTTCATACCTTCGATGAATGCACGGTCTTCCGACAGACGGAATTCAGCAGTATTG 26581 Query 19388 CCGTTGAGGTCGGCCAGGGCCTTGTCCACTTCGGCGTAGGTTTCCAGCATCCCCATGCTG 19447 ||||| || || ||||| | ||| || || || || ||||||||||||||||| | | Sbjct 26580 CCGTTCAGATCAGCCAGAGACTTATCAACCTCAGCATAGGTTTCCAGCATCCCGCAGGAG 26521 Query 19448 TCCTTGACCTGCACGGTGCGGGACTTCTCGGGCTGCACGCCATAGTTCAGCTTGCGCCAG 19507 || | ||||| |||||| || || |||||||| || ||||||||| |||||| Sbjct 26520 TCTGTAACCTGTACGGTGGTTGATTTGCTTGGCTGCACACCGTAGTTCAGCAAGCGCCAT 26461 Query 19508 GTGCCGGTGGGCAGGCCGCTGCGAACCGTGGTCTTGTGCTCGGTGAAACCGTTGGCCTCG 19567 || | | |||| || || || ||||| |||| | || |||| |||| Sbjct 26460 GTCGCAGATGGCAAACCAGATCGCACAGTGGTGCGGTGCCCTGTTGGCAGGTTGCCCTCT 26401 Query 19568 ATGACGGTCATGT-CGTCGAGGATTTCGTTGGTTTCGTTCAGCATTTCGACGATCT 19622 | || |||||| |||| ||||||||||| || | | || | |||||| |||| Sbjct 26400 ACGAACATCATGTCCGTC-AGGATTTCGTTTGTCTGGGAAAGGAGTTCGACAATCT 26346 >seq5618 Length=666 Score = 120 bits (132), Expect = 8e-23 Identities = 295/438 (67%), Gaps = 11/438 (3%) Strand=Plus/Plus Query 30061 GCCCTTGGTGCCCCACACCACGTATTCGCACTGGTGCCGGAAATATCCTTTGTGCGGCGC 30120 ||||||| | ||||||||||| || ||| ||||| ||||| || || || || Sbjct 63 GCCCTTGCTTCCCCACACCACATACTCGGCCTGGTTGCGGAAGCGCCCCAGCTGGGG-GC 121 Query 30121 CCGGGCGCCACGGCCCTTGTCCCAGGCGATGAGGCCGCGCCAGAACACGCCGCCGGCCTG 30180 | || || ||| | |||||||| | | ||||||||| | |||| || ||| Sbjct 122 GCACGC-CCTCGGTC-TTGTCCCACACAGCAACACCGCGCCAGGTGAAGCCGGCGCACTG 179 Query 30181 CACCGCGTCGGACATCAGCGGCAGTTGGCGCCAGTCGGTGAAGGCCATGAAGTAGCCGCC 30240 || |||||| | | |||||||| || |||||||||||||| || | | |||| Sbjct 180 CAGCGCGTCAGTGGTGAGCGGCAGCTGTCGCCAGTCGGTGAACAGCAGCACCGGGGCGCC 239 Query 30241 GGGCTTGAGCACGCGCACGCACTCGGCGATCCACAAGGAACACCAAGTCAGATAGCTGCG 30300 | ||| |||||||| ||||||||| | |||||| ||| | ||| | ||| Sbjct 240 GTCCTTCAGCACGCGGCTGCACTCGGCCAGCCACAACCGCATCCATGCCAGGTGCGAGCG 299 Query 30301 CTGGTCGCGCGAGTCGCCG--GAAAACGTCGGGTAGC-GCCCCTGCGAGCCGCTTTGCGT 30357 |||||||||| |||||| |||| | || | ||| || ||| |||| ||| | Sbjct 300 CTGGTCGCGCTCATCGCCGACGAAATCTGCGTGCAGCTGCTCCT---TTCCGCCCTGCAT 356 Query 30358 GTACTTCGCGT-CGGGGTCTTTGGCCTTGTCGTCGCGCGAGAACCCGCCGCTGCTGTAGG 30416 ||||||| | | ||| | || ||| | || ||| | | || |||||| ||||| Sbjct 357 GTACTTCACCTGCGGTGCCTGCTGCCGGGACGATGCGTGCG-TGCCTCCGCTGGCGTAGG 415 Query 30417 GTGGGTCGGTGATAACGGCGTCCACGCTTTCGCTCGGCATGGCGATGAGCGCGGGCAGGG 30476 | ||||| ||||| | |||||| | ||| || ||||| || || ||| ||||| Sbjct 416 GGGGGTCAGTGATGAGGGCGTCGAAGCTGCCGGCCGGCAGGGTTGGCAGGACGGTCAGGG 475 Query 30477 CCTCGCCCTGAATCAGTT 30494 | ||||| || |||| || Sbjct 476 CATCGCCGTGGATCAATT 493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 135834410953220