Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq1158 86.0 5e-12 >seq1158 Length=25781 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCT 48575 ||| || ||||| || ||||||||||||||||||||| | | | || || | |||| Sbjct 9270 CACCAAGTGAAGGGTTGACTCCTTTTGAATGTTGTAATCGGAGAGAGTG-CGACCATCCT 9328 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 | || ||||| ||| || | || | ||| || ||||| || | || ||||| || Sbjct 9329 CGAGTTGCTTGCCGGCGAAGATGAGACGTTGTTGATCGGGTGGGATACCCTCCTTATCTT 9388 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 ||| || ||||| | | |||||||||| | ||| ||| | || || || | Sbjct 9389 GAATCTTGGTCTTGACGTTCTCGATGGTATCGGAACCCTCGACCTCCAAGGTAATTGTCT 9448 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 |||| ||||| || || || ||||||||||| Sbjct 9449 TACCAGTGAGGGTCTTGACGAAAATCTGCAT 9479 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 ||| || ||| |||||||||||| ||||| || | | || | ||||| ||||| Sbjct 9504 ATGGAGGGTGGACTCCTTTTGAATATTGTAGTCGGAGAGAGTACGACCATCCTCGAGCTG 9563 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 |||||| || | || ||||| || || || || | || |||||||| ||| || Sbjct 9564 CTTACCAGCGAAGATCAAACGTTGTTGGTCAGGTGGAATACCCTCCTTGTCTTGAATCTT 9623 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||||| | | ||||| || | | ||| ||||| || ||||| |||||||| Sbjct 9624 GGTCTTGACGTTCTCGATGGTGTCAGAACCCTCAACCTCGAGAGTGATGGTCTTACCGGT 9683 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 ||| || || |||||||| ||||| Sbjct 9684 GAGGGTCTTAACAAAAATTTGCAT 9707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421182496825382