Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_005841.1 Length=41391 Score E Sequences producing significant alignments: (Bits) Value seq3951 706 0.0 seq3933 601 9e-168 seq2342 102 2e-17 seq7676 86.0 2e-12 >seq3951 Length=514 Score = 706 bits (782), Expect = 0.0 Identities = 463/511 (91%), Gaps = 0/511 (0%) Strand=Plus/Plus Query 21588 GACTGTGTGTTATGGCCACACCGGAAAAGACATCATGCCTGGTAAAACGTATACCGAAGC 21647 |||||| ||| | || || || |||||||||||||||| ||||||||||||||| |||| Sbjct 4 GACTGTATGTCACGGGCATACAGGAAAAGACATCATGCTCGGTAAAACGTATACCAAAGC 63 Query 21648 AGAATGCAAAGCCCTCCTGAATAAAGACCTTATCACTGTCGCCAGACAAATTAACCCGTA 21707 ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| Sbjct 64 AGAATGCAAAGCCCTCCTGAATAAAGACCTTGCCACGGTCGCCAGACAAATTAACCCGTA 123 Query 21708 CATCAAAGTAGATATACCGGAAACAACGCGCGGCGCTCTTTACTCGTTCGTTTACAATGT 21767 ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 124 CATAAAAGTTGATATACCGGAAACAACGCGCGGCGCTCTTTACTCGTTCGTTTACAACGT 183 Query 21768 GGGCGCAGGCAATTTCAGAACATCGACGCTTCTTCGCAAAATCAATCAGGGTGATATCAA 21827 |||||| ||||||||||||||||||||||||||||||||||| || ||||| |||||||| Sbjct 184 GGGCGCTGGCAATTTCAGAACATCGACGCTTCTTCGCAAAATAAACCAGGGCGATATCAA 243 Query 21828 AGGTGCATGTGATCAGCTACGTCGCTGGACATACGCTGGCGGTAAGCAATGGAAAGGCCT 21887 ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| || Sbjct 244 AGGCGCATGTGATCAGCTACGTCGCTGGACATATGCTGGCGGTAAGCAATGGAAAGGTCT 303 Query 21888 GATGACTCGTCGTGAGGTTGAGCGTGATGTCTGTTTGTGGGGTAAGCAATGAGCAGATTA 21947 ||||||||||||||| |||||||||| |||||||||||||| |||||||| |||| || Sbjct 304 CATGACTCGTCGTGAGATTGAGCGTGAAATCTGTTTGTGGGGTCAGCAATGAACAGAGTA 363 Query 21948 ACCTCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCATGGGCTGTTAAT 22007 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 364 ACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCATGGGCTGTTAAT 423 Query 22008 CATTATCGTGATAACGCCATCACCTACAAAGTCCAGCGCGACACTGTTACTCAAAAGCTG 22067 ||||| |||||||||||||| |||||||||| ||||||||||| | | | | ||| Sbjct 424 CATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAATGCCAGAGAACTG 483 Query 22068 GCGCTGGCGAACGCGACAATTACCGATATGC 22098 ||||||||||||| ||||||| || |||| Sbjct 484 AAGCTGGCGAACGCGGCAATTACTGACATGC 514 >seq3933 Length=4962 Score = 601 bits (666), Expect = 9e-168 Identities = 738/999 (74%), Gaps = 9/999 (1%) Strand=Plus/Minus Query 13483 GCTGGCTAACCGTGCTTCCTATAGGTCTGCGGCATGCTTCCAATTACCTTTCCAAAGACA 13542 |||| || ||||| |||||||| ||||||||||| || ||||| ||||| || || | Sbjct 1577 GCTGATTATCCGTGTTTCCTATACGTCTGCGGCATACTGCCAATAACCTTCCCGAAAATG 1518 Query 13543 AAAACCCTATTCATTTCATCTCTTTCAATTGGGTCCCAAGCTGAATAACTCTTATTATCA 13602 || |||| ||||| || ||| | || || |||||||| | ||| || ||||| |||||| Sbjct 1517 AACACCCGGTTCATCTCGTCTTTCTCGATCGGGTCCCACGGTGAGTAGCTCTTGTTATCA 1458 Query 13603 GATATGACCAATAGTTTATCTTTCATCTTCTGGAGCCGCTTAACATGTGCAGTATCGTCA 13662 || || |||| ||| |||||||||||| | || || ||||| ||||| || || ||||| Sbjct 1457 GAGATAACCAGTAGCTTATCTTTCATCATTTGCAGGCGCTTTACATGGGCTGTGTCGTCG 1398 Query 13663 TAGAGGAAGGCGTATATCCCATCCCCATCGAAGTTTTTGATGCTTACGTCTACAAACAAC 13722 || || || || || || ||||| || ||||| ||| | | | || || |||| | Sbjct 1397 TACAGAAACGCATAGATACCATCACCGTCGAAAGATTTAACCGTGATATCAACGAACAGC 1338 Query 13723 AGATCTCCTGGTTCAATAGTTCCTGACATGCTATCTCCGCGCACATTTATGATGCGGATA 13782 ||||| |||||||| || |||||||||||||| || |||||||| || |||||||||||| Sbjct 1337 AGATCACCTGGTTCGATCGTTCCTGACATGCTGTCACCGCGCACGTTAATGATGCGGATA 1278 Query 13783 TTTTCAGCCTTTCTACCATCGAACATGTGTCTGGCATCGTCCTGCGAATACTCAACCGAG 13842 ||||| ||||| || |||||||||||||| | |||||||| ||| |||||||||||| Sbjct 1277 TTTTCCGCCTTCCTGCCATCGAACATGTGACGAGCATCGTCAAACGAGTACTCAACCGAG 1218 Query 13843 CGGAGTATTTCCACGAATTCTCGATTGATAACGCCAGGACCCGCGCTAACTTCAAGATCT 13902 || || | |||||| || || || ||||| || || || || || || ||||| | ||| Sbjct 1217 CGTAGAACTTCCACAAACTCACGGTTGATGACACCCGGTCCGGCACTGACTTCTATATCA 1158 Query 13903 AGGATATCGATTTTAAATGTGTTTGAA--GATG-GAGATGCGTTTATCGGAGTAGTT--C 13957 || | || || || || |||||| | || || | | || | || | ||| | Sbjct 1157 AGAACGTCAATCTTGAAGTATTTTGAATGGCTGACAGCAG-GCTTCCCTGA-TTGTTGAC 1100 Query 13958 CATCTTTTTTCATAGGACCAATTCCGGTAGACAACCATTCCGAATTAACACCTAACGCGT 14017 | || ||| |||| || || || || | || | |||||| | |||||| || || | Sbjct 1099 CGTCATTTCTCATCGGGCCTATGCCTGATGAGAGCCATTCTGTTCGAACACCCAATGCAT 1040 Query 14018 TTGCTATTTCAACAATCTTTGTTGACCCACGAGCGTTTCCACTTGTCAAACGCCAGATCG 14077 | |||||||||||||| |||||||| || || ||||| || ||||||| | |||||| | Sbjct 1039 TAGCTATTTCAACAATTTTTGTTGAGCCGCGCGCGTTGCCGCTTGTCAGTCTCCAGATTG 980 Query 14078 TTGGCTGAGCAACGCCTGACGCTTTAGCGAGAGCACCTTGAGACATACCAGCCAGTTCCA 14137 | || ||||| ||||| ||||| || || ||||| ||||||||||| |||| |||||| Sbjct 979 TGGGTTGAGCTACGCCAGACGCCTTTGCAAGAGCGCCTTGAGACATTCCAGATTGTTCCA 920 Query 14138 TTGCCTTGTTGAGACGGTCAGAGAGAGTTTCTTTTTTCATAATATTCAATTTATACGCTT 14197 | || ||| | || |||| ||||||||||||||||||| || ||||||||||||| Sbjct 919 TCGCTAGGTTTAAGCGATCAGCAAGAGTTTCTTTTTTCATAAGTTTTAATTTATACGCTT 860 Query 14198 GCGTATTAATGGTCAAAACACGTTTTGCTATTGCTTTGATTAATACTCATTGCTATTATT 14257 ||||||| |||||||||||||||||||||||||||| | ||||||| ||||||||||||| Sbjct 859 GCGTATTGATGGTCAAAACACGTTTTGCTATTGCTTGGGTTAATACGCATTGCTATTATT 800 Query 14258 TGTTGTGTGTTATACGAAAGGGAATAAGCAATGACTAACAAAGCAATACAAAAAGCTGTT 14317 || || |||| || ||||| |||||| || || | || ||| || | Sbjct 799 CATTCATTGCAATACCAATAGGAATTGATAATGACAAATCAAACCATTCAACTCGCAATC 740 Query 14318 GCCATTGCAGGAAGCCAGCAAAAACTCGCCTCTTTGTGTGGAGTTAAGCAGCCAACTGTA 14377 ||| |||| || || || ||| || | | || || || || || || || Sbjct 739 AGTATTACAGGTAGTCAAAAACGACTGGCAGATCTATGCGGTGTAGCCCAACCCACAGTT 680 Query 14378 TGGCGTTGGTTACATGGTGGCGGCATTGACGCTAAGTATGTGGCAGCAATCGTAAAAGCT 14437 ||||||||| |||| |||||||| ||||| || ||||| ||| || ||| Sbjct 679 TGGCGTTGGCTACACGGTGGCGGAATTGATGCCCGCTATGTAATGAAAATTGTCTCAGCC 620 Query 14438 ACAGGAGGAAGAATTAAAGCCAG-AGAACTTCGTCCTGA 14475 || || |||| |||||| |||| ||| ||||||| || Sbjct 619 ACTGGTGGAAAGATTAAA-CCAGCAGATATTCGTCCCGA 582 >seq2342 Length=4104 Score = 102 bits (112), Expect = 2e-17 Identities = 78/90 (87%), Gaps = 2/90 (2%) Strand=Plus/Plus Query 4641 CTCCATAAAACAAAACTCGCCGTAGCGAGCTCAGATAAAAGAAATCCCCGCGAGTGCGAG 4700 |||||||||||||||| |||||||||||| ||||||||||||||||| || |||||||| Sbjct 1979 CTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAAGAAATCCTCGTCAGTGCGAG 2038 Query 4701 GATTGTTATTCATTGCCGATATTCATCTTT 4730 || || | |||||||| | ||| || |||| Sbjct 2039 GA-TGCTGTTCATTGCTGCTATACA-CTTT 2066 >seq7676 Length=607 Score = 86.0 bits (94), Expect = 2e-12 Identities = 50/52 (96%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 3044 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCAGTTAAA 3095 |||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 49 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTTCAA 100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132308571337852