Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_005857.1 Length=51601 Score E Sequences producing significant alignments: (Bits) Value seq1888 376 8e-100 seq11471 105 2e-18 seq1559 86.0 2e-12 >seq1888 Length=917 Score = 376 bits (416), Expect = 8e-100 Identities = 459/622 (74%), Gaps = 3/622 (0%) Strand=Plus/Minus Query 44158 GCCTGAATATTTATGCTTGCGCCGCACGCCTGCGCGTATTTGTTTAGCGTCTTCATGCTG 44217 || |||||||| ||| |||| || || ||||| || ||| | ||| || ||||| ||| Sbjct 622 GCGTGAATATTGATGGTTGCACCACAGGCCTGAGCATATCTTGTTAAAGTTTTCATACTG 563 Query 44218 GCACCCAGCGGGTTGCCTTCCAGGCGGCTAATTGCGGACGGT-GTAATCCCCATACGTTC 44276 || || | || || | |||||| || || || || ||||| |||||||| || ||||| Sbjct 562 GCTCCTAAAGGATTACTTTCCAGCCGACTGATGGCTGACGGGCGTAATCCC-ATTCGTTC 504 Query 44277 AGCCAGGGCCGATTTACTCAAACCGGCCTTCTCTCTCATCTCATACAGCATTTCGACCAG 44336 ||||| || || || | || || || || |||||||| || || | |||||| |||| Sbjct 503 GGCCAGCGCAGACTTTGTTAACCCCGCTTTTTCTCTCATTTCGTATAACATTTCTACCAT 444 Query 44337 CGCCAGTTCTTTATCTGCTTCCTGATAACCCCGGATTGCCTCCGGGGTGTTGAGCAGACT 44396 | |||||||||| || || || | ||| || | || || || | || ||||| | Sbjct 443 CTCCAGTTCTTTGTCAGCATCTTCATACCCTTTAACAGCTTCTGGAGCATTAAGCAGTTT 384 Query 44397 TTCTTTAACCTGGTTAAATGGGATGCCTTTTACTTTCATTCACTCATCTCCTTCAGGCGC 44456 || || |||||| | ||||| | |||||||||||||| ||||||||||||||||| Sbjct 383 TTGCTTTACCTGGCTGAATGGAACACCTTTTACTTTCATCATTTCATCTCCTTCAGGCGC 324 Query 44457 GTTCTTGCTATTTCTATGGCCCCTGGCGGGGTTTTCGGTGTCTTCTTAACAAATGCATGC 44516 | || || ||||| || || | || || || | ||||| || |||||||||||| Sbjct 323 ATCCTGGCGATTTCAATAGCTTTCGTTGGTGTCTTTTGCGTCTTTTTCACAAATGCATGC 264 Query 44517 AGTAGGTAAATTTCGTGGCCAACTGCGTAAGCGTATAACGTTCTTGCTATGTTCTTATCT 44576 || || |||||||||| || ||| |||||||| | || ||||| || || ||||| Sbjct 263 AGCAGATAAATTTCGTTACCCGTTGCATAAGCGTACAGTGTCCTTGCGATATTTTTATCC 204 Query 44577 CCAACCCGTAACTCAAACAGCCCACCGCCAATTACGCGGCTATGAGGCATTTTTAATTTA 44636 || || | | ||||| ||||| ||||||||||| ||||| ||||| ||||| | ||| Sbjct 203 CCGACTCTCAGTTCAAAAAGCCCTCCGCCAATTACACGGCTGTGAGGTATTTTCATTTTG 144 Query 44637 TTCCCTTCACTTTCCAGCCTTTCAATCAACCTGGTCATCCGGCCTCGTAGCTCATCTGGT 44696 || ||||| |||||||| |||||||| |||| ||| || || || || | |||||| Sbjct 143 TTACCTTCCTGTTCCAGCCGTTCAATCAGTCTGGCCATGCGACCACGCAGATTGTCTGGT 84 Query 44697 AATTCCTGAAGCTCATCCAGTGCCGCCGGGTGGGTTATTACGTTAAACATAGCATATCCT 44756 |||||| | |||||||||||||| | |||||| || || || ||||||||| ||| ||| Sbjct 83 AATTCCAGCAGCTCATCCAGTGCGGTCGGGTGAGTAATCACATTAAACATATTATAGCCT 24 Query 44757 CCTAGCGTGTATAAATATACCA 44778 || | | || ||||| |||| Sbjct 23 CCGAAAGAATA-AAATACACCA 3 >seq11471 Length=365 Score = 105 bits (116), Expect = 2e-18 Identities = 91/111 (82%), Gaps = 4/111 (4%) Strand=Plus/Minus Query 32514 CACCACCGGAGTTCCTACACTCGTTGGTGGTGACCCAGACAAGGGTAGGAATACCGGCCC 32573 |||||||||||||||||| ||| | ||||||||||| || ||||||||||||||||| Sbjct 335 CACCACCGGAGTTCCTACGCTCATGGGTGGTGACCCGAACGGGGGTAGGAATACCGGCCT 276 Query 32574 AATCA--GCTACCGGCCAGCCCGAAAGCTGCCCTGCCTGAGCCACCATAAT 32622 ||| | ||||||||||||||| ||||||| ||| | ||||||| || Sbjct 275 --TCAAGGAAACCGGCCAGCCCGAAGGCTGCCCCGCCCGGACCACCATTAT 227 >seq1559 Length=8142 Score = 86.0 bits (94), Expect = 2e-12 Identities = 82/104 (79%), Gaps = 1/104 (1%) Strand=Plus/Plus Query 32517 CACCGGAGTTCCTACACTCGTTGGTGGTGACCCAGACAAGGGTAGGAATACCGGCCCAAT 32576 ||||| ||||||||| ||| |||||| | ||||||| |||||||||||||||| || Sbjct 6714 CACCG-AGTTCCTACGCTCATTGGTGATAGCCCAGACGGGGGTAGGAATACCGGCGTCAT 6772 Query 32577 CAGCTACCGGCCAGCCCGAAAGCTGCCCTGCCTGAGCCACCATA 32620 | | ||||||||| | | |||||| |||||||| |||||| Sbjct 6773 CGGAAACCGGCCAGGCTAATGCCTGCCCCGCCTGAGCTACCATA 6816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 164975379389492