Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_005880.2 Length=148317 Score E Sequences producing significant alignments: (Bits) Value seq232 181 1e-40 >seq232 Length=384298 Score = 181 bits (200), Expect = 1e-40 Identities = 425/637 (67%), Gaps = 21/637 (3%) Strand=Plus/Plus Query 135497 CAGCAGGTCATGCAATTAGTTTTAAAGGTAGTGATACAGTACCTGTAGTGGATTTCTTAG 135556 |||| || ||| | | ||||||| ||| |||||| | || | | |||||||||| Sbjct 85362 CAGCTGGACATTTATTGAGTTTTACAGGATCTGATACCATTCCGGCGATCGATTTCTTAG 85421 Query 135557 AATCATATTACAATGCAGACGTAGAGAAGGAAATGGTTGTTGCTTCTATCCCTGCTACTG 135616 || |||||| || || | ||| || ||| |||| | | ||| || |||| || | Sbjct 85422 AAGAATATTATAACGCCAATTCAGACAAAGAATTGGTGGCAGGTTCAGTCGCTGCAACAG 85481 Query 135617 AGCACTCAGTAATGTGTGCAAATGGTAATTATGAAACCATGGATGAGTATGAAACATATA 135676 | || || |||||||| |||| || | || | |||||| ||||| | | Sbjct 85482 AACATTCTGTAATGTGC----ATGGGAACGACAGAA-----GGTGAGTACGAAACCTTCA 85532 Query 135677 AACGTATGTTAACAGAAATATATCCAACAGGCATTTTCTCTATTGTGTCTGATACTTGGG 135736 || | | | |||||| | ||||||| ||| ||| | ||||| || ||||||||||||| Sbjct 85533 AAAGATTAATTACAGAAGTTTATCCAAAAGGAATTGTTTCTATCGTTTCTGATACTTGGG 85592 Query 135737 ACTTTTGGGGTAATATGACTAAAACTTTACCT----AGATTAAAGGATATTATTATGGAA 135792 | || ||| | | | ||| | |||||| |||||||| || ||| | Sbjct 85593 ATTTATGGAA-AGTTT---TAACAGATTACCTCCCAAGATTAAAAGAAGATATCGTTTCT 85648 Query 135793 CGTAATGGTAAAGTAGTAATCAGACCTGATAGTGGAGACCCTGTTAAAATTATTTGCGGA 135852 | | || ||||| || || | ||||| ||||| || || || |||||| |||||| Sbjct 85649 AGAGAAGGAAAAGTGGTTATTCGTCCTGACAGTGGTGATCCAATTTTAATTATCTGCGGA 85708 Query 135853 GACCCTGATGCAGACACTGAATATGAACGTAAAGGTGCAGTAGAAGTGCTTTGGGATACA 135912 | ||||| | | | || ||| | || ||||| | | ||| ||||||||||| Sbjct 85709 AATCCTGACGGAAAAACAGAACAAGAGAAAAAAGGAGTTATCGAATTGCTTTGGGATGTT 85768 Query 135913 TTTGGAGGTACTGAAACTGAAAAAGGGTACAAAGTATTAGATGAACATGTAGGATTAATT 135972 ||||| || || || || ||||| | ||||| ||| | | ||| | ||| |||| Sbjct 85769 TTTGGTGGAACGACAAACGATAAAGGTTTCAAAGAATTGGTTCCACAAATCGGAGCAATT 85828 Query 135973 TATGGAGACTCTATTAACTATGAACGTGCTCAAC--AAATTTGTGAAGGATTAAAAGAAA 136030 ||||| || ||||| | | | | | |||| |||| || || ||||||||| | Sbjct 85829 TATGGCGATAGTATTACCGTAGCAAGAG--CAACTGAAATCTGCGAGAGATTAAAAGCGA 85886 Query 136031 AAGGTTTTGCAAGTATTAATGTTGTATTAGGTGTAGGTAGTTTCTCTTACCAATTTAATA 136090 |||||||||| || || || || ||||| | || |||| | || |||| |||| Sbjct 85887 AAGGTTTTGCTTCTACAAACGTGGTTTTAGGAATTGGATCTTTCACGTATCAATACAATA 85946 Query 136091 CTCGTGATACCCACGGGTTTGCAATCAAAGCAACGTA 136127 | |||||||| || |||||||| |||||||| || Sbjct 85947 CACGTGATACTTTTGGTTTTGCAATGAAAGCAACTTA 85983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 474407030287440